Bacteria 16S rRNA |
Name of primer |
Sequence |
EB-20F |
5′ AGTTTGATCCTGGCTC 3′ |
EB-350F |
5′ TACGGGAGGCAGCAG 3′ |
EB-1100R |
5′ AGGGTTGCGCTCGTTG 3′ |
EB-1400R |
5′ ACGGGCGGTGTGTAC 3′ |
EB-1530R |
5′ AAGGAGGTGATCCAGCC 3′ |
Reference of primer
- Itoh, T., Kudo, T., Oyaizu, H. and Seino, A.
Two new species in the genus Actinomadura: A. glomerata sp. nov., and A. longicatena sp. nov.
Actinomycetologica 9: 164-177, 1995.
DOI: 10.3209/saj.9_164.
- Namwong, S., Tanasupawat, S., Smitinont, T., Visessanguan, W., Kudo, T. and Itoh, T.
Isolation of Lentibacillus salicampi strains and Lentibacillus juripiscarius sp. nov. from fish sauce in Thailand.
Int. J. Syst. Evol. Microbiol. 55: 315-320, 2005.
PMID: 15653893. DOI: 10.1099/ijs.0.63272-0.
|
Archaea 16S rRNA |
Name of primer |
Sequence |
A-20F |
5′ TCCGGTTGATCCTGCCG 3′ |
A-340F |
5′ CCCAGGCCCTACGGG 3′ |
A-520R |
5′ GTATTACCGCGGCGGCTG 3′ |
A-1100R |
5′ CGGGTCTCGCTCGTT 3′ |
A-1400R |
5′ GACGGGCGGTGTGTGC 3′ |
Reference of primer
- Itoh, T., Suzuki, K. and Nakase, T.
Occurrence of introns in the 16S rRNA genes of members of the genus Thermoproteus.
Arch. Microbiol. 170: 155-161, 1998.
PMID: 9683654. DOI: 10.1007/s002030050628.
- Itoh, T., Suzuki, K., Sanchez, P. C. and Nakase, T.
Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines.
Int. J. Syst. Evol. Microbiol. 53: 1149-1154, 2003.
PMID: 12892143. DOI: 10.1099/ijs.0.02580-0.
|
Fungi 26S rRNA |
Name of primer |
Sequence |
ITS5 |
5′ GGAAGTAAAAGTCGTAACAAGG 3′ |
ITS4 |
5′ TCCTCCGCTTATTGATATGC 3′ |
NL1 |
5′ GCATATCAATAAGCGGAGGAAAAG 3′ |
NL4 |
5′ GGTCCGTGTTTCAAGACGG 3′ |
Reference of primer
- White, T. J., Bruns, T., Lee, S., and Taylor, J. W. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, In: Innis, M. A., Gelfand, D. H., Sninsky, J. J., and White, T. J. (eds.), PCR Protocols: A Guide to Methods and Applications, pp. 315-322, Academic Press, New York.
- O’Donell, K. (1993). Fusarium and its near relatives, In: Reynolds, D. R. and Taylor, J. W. (eds.), The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics, pp. 225-233, CAB International, Wallingford.
|