Nakamura & White RFLP clone List
| RDB No. |
HPR01001 |
Name of clone |
pMCR3 |
| Chromosome |
1p |
Locus |
|
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
6.0 kb |
| Comment |
N – Ras Tight linkage to NGFb |
Linkage analysis |
FY NGFb PGMI |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 9623 (1987) |
Developer |
M. Carlson, Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 6.0 kb EcoR I fragment from the cosmid cMCR3 (isolated by N-Ras cDNA probe) was subcloned into EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
EcoR I (E1 : 6.0 kb, E2 : 4.8 kb). Not polymorphic for Msp I, Taq I, Rsa I, Bgl II, Pst I, Pvu II, BamH I, Hind III. |
| RDB No. |
HPR01002 |
Name of clone |
pTHI54 |
| Chromosome |
1p |
Locus |
D1S62 |
| Vector |
pBR322 |
Cloning site |
Hind III |
Insert size |
13.0 kb |
| Comment |
Insulin |
Linkage analysis |
FY NRAS NGFb RH |
| Reference |
Nucleic Acids Research, 16, 3115 (1988)
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 13.0 kb Hind III fragment from the phage THI54 (isolated by the oligonucleotides of insulin coding region) was subcloned into the Hind III site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, BamH I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Rsa I, Taq I (P1 : 6.0 kb, P2 : 5.0 kb). |
| RDB No. |
HPR01004 |
Name of clone |
pEFZ13 |
| Chromosome |
1p |
Locus |
D1S64 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
5.5 kb |
| Comment |
|
Linkage analysis |
FY NRAS NGFb (multipoint linkage analysis) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 5704 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.5 kb Taq I fragment from the cosmid cEFZ13 was subcloned into the Acc I site of pUC18. |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 5.0 kb, M2 : 3.3 kb). Constant bands (1.6 kb, 0.7 kb, 0.6 kb). Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR01006 |
Name of clone |
pYNZ2 |
| Chromosome |
1p |
Locus |
D1S57 |
| Vector |
pBR322 |
Cloning site |
Hind III |
Insert size |
3.0 kb |
| Comment |
VNTR |
Linkage analysis |
(multipoint linkage analysis) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 4747 (1988) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 3.0 kb Hind III fragment from the cosmid cYNZ2 (isolated by the oligonucleotides of zetaglobin coding region) was subcloned into the Hind III site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Rsa I, Taq I, Bgl II, Pst I, Pvu II, EcoR I, BamH I, Hind III (VNTR polymorphism with bands between 1.0 kb and 3.0 kb). |
| RDB No. |
HPR01007 |
Name of clone |
pYNZ23 |
| Chromosome |
1q |
Locus |
D1S58 |
| Vector |
pBR322 |
Cloning site |
Msp I / Cla I |
Insert size |
5.0 kb |
| Comment |
|
Linkage analysis |
REN FY (multipoint linkage analysis) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 9620 (1987) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 5.0 kb Msp I fragment from the cosmid cYNZ23 (isolated by the oligonucleotides of zetaglobin coding regin) was subcloned into the Cla I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I, BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Rsa I, Taq I (M1 : 5.0 kb, M2 : 4.5 kb). |
| RDB No. |
HPR01008 |
Name of clone |
pMLAJ1 |
| Chromosome |
1 |
Locus |
D1S61 |
| Vector |
pBR322 |
Cloning site |
EcoR I – Hind III |
Insert size |
0.8 kb |
| Comment |
VNTR Myoglobin |
Linkage analysis |
REN FY NGFb |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 19, 4801 (1991) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 0.8 kb Hind III – EcoR I fragment (isolated from cMLAJ1 using the oligonucleotides of myoglobin coding region) was subcloned into Hind III-EcoR I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Hinf I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Pvu II, Rsa I, Taq I (VNTR polymorphism with alleles between 1.5 kb and 3.0 kb). |
| RDB No. |
HPR01010 |
Name of clone |
pHBI40 |
| Chromosome |
1q |
Locus |
D1S66 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
4.4 kb |
| Comment |
|
Linkage analysis |
REN FY NRAS |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 9622 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.4 kb Msp I fragment from the cosmid cHBI40 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 8.0 kb, M2 : 4.4 kb). Not polymorphic for Taq I, Rsa I. |
| RDB No. |
HPR01011 |
Name of clone |
pHHH106 |
| Chromosome |
1 |
Locus |
D1S67 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.2 kb |
| Comment |
|
Linkage analysis |
FY NRAS NGFb |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research , 16, 5218 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.2 kb Taq I fragment from the cosmid cHHH106 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.3 kb, M2 : 2.0 kb). Not polymorphic for Rsa I, Taq I. |
| RDB No. |
HPR01012 |
Name of clone |
pEFD53.2 |
| Chromosome |
1 |
Locus |
D1S73 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
4.7 kb |
| Comment |
|
Linkage analysis |
FY NRAS NGFb |
| Reference |
Nucleic Acids Research, 16, 3116 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.7 kb Taq I fragment from the cosmid cEFD53 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 7.0 kb, T2 : 4.7 kb). Msp I (M1 : 2.3 kb, M2 : 1.9 kb). Not polymorphic for Bgl II, Pst I, Pvu II and Rsa I. |
| RDB No. |
HPR01013 |
Name of clone |
pTHH33 |
| Chromosome |
1 |
Locus |
D1S81 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
5.6 kb |
| Comment |
VNTR |
Linkage analysis |
|
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9363 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.6 kb EcoR I fragment from the cosmid cTHH33 (isolated with the oligonucleotides of HBV-2 coding region) was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I, Taq I, Bgl II, Pst I, Pvu II, BamH I, EcoR I, Msp I, Hind III (VNTR polymorphism with bands between 4.0 kb and 6.5 kb). |
| RDB No. |
HPR01014 |
Name of clone |
pMCT118 |
| Chromosome |
1p |
Locus |
D1S80 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
3.1 kb |
| Comment |
VNTR |
Linkage analysis |
|
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9364 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.1 kb Pst I fragment from the cosmid cMCT118 [isolated with the oligonucleotides (GTGTGTGTGTGTGTGTGTGT ) ] was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hinf I, Rsa I, Taq I, Msp I, Pvu II, Hae III, Pst I (VNTR polymorphism with bands between 0.3 kb and 1.2 kb). |
| RDB No. |
HPR01015 |
Name of clone |
pMCT58 |
| Chromosome |
1p |
Locus |
D1S77 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
3.0 kb |
| Comment |
VNTR |
Linkage analysis |
|
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9367 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Pst I fragment from the cosmid cMCT58 [isolated by the oligonucleotides (GTGTGTGTGTGTGTGTGTGT) ] was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, Rsa I, Taq I, Bgl II, Pst I (VNTR polymorphism with bands between 1.3 kb and 1.6 kb). |
| RDB No. |
HPR01016 |
Name of clone |
pCMM12(pCMM12.1) |
| Chromosome |
1 |
Locus |
D1S76 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
5.3 kb |
| Comment |
VNTR |
Linkage analysis |
(multipoint linkage analysis) |
| Reference |
Nucleic Acids Research, 16, 9368 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.3 kb Taq I fragment from the cosmid cCMM12 (isolated by the oligonucleotides of myoglobin-2 coding region) was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I, Bgl II, Pst I, BamH I, Hind III (VNTR polymorphism with bands between 3.0 kb and 4.0 kb). |
| RDB No. |
HPR02001 |
Name of clone |
pYNH24 |
| Chromosome |
2 |
Locus |
D2S44 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.0 kb |
| Comment |
VNTR |
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10073 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.0 kb Msp I fragment from the cosmid cYNH24 [isolated by HBV-2 oligonucleotides (GGAGTTGGGGGAGGAG) ]was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Taq I, Bgl II, Pvu II, Pst I, BamH I (VNTR polymorphism with bands between 1.0 kb and 5.0 kb). Not polymorphic for Rsa I. |
| RDB No. |
HPR02002 |
Name of clone |
pYNZ15 |
| Chromosome |
2 |
Locus |
D2S50 |
| Vector |
pBR322 |
Cloning site |
BamH I |
Insert size |
3.1 kb |
| Comment |
|
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 5702 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.1 kb BamH I fragment from the cosmid cYNZ15 was subcloned into the BamH I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 1.8 kb, T2 : 0.9 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Msp I. |
| RDB No. |
HPR02003 |
Name of clone |
pHHH133 |
| Chromosome |
2 |
Locus |
D2S45 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
7.0 kb |
| Comment |
|
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10075 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 7.0 kb fragment from the cosmid cHHH133 was subcloned into the EcoR I site of pUC 18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 1.4 kb, M2 : 1.3 kb) with a constant band at 4.0 kb, 1.0 kb. Not polymorphic for Rsa I, Pst I, Bgl II, Pvu II, Taq I. |
| RDB No. |
HPR02004 |
Name of clone |
pYNZ9.1 |
| Chromosome |
2 |
Locus |
D2S46 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
6.6 kb |
| Comment |
|
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10074 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 6.6 kb Msp I fragment from the cosmid cYNZ9.1 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 1.1 kb, M2 : 1.0 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Msp I. |
| RDB No. |
HPR02005 |
Name of clone |
pTBAB5.7 |
| Chromosome |
2 |
Locus |
D2S47 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.3 kb |
| Comment |
VNTR |
Linkage analysis |
ACP D2S1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10072 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.3 kb Msp I fragment from the cosmid cTBA5.7 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, Rsa I, Bgl II (VNTR polymorphism with bands between 4.1 kb and 5.0 kb). Not polymorphic for Taq I, BamH I, Hind III. |
| RDB No. |
HPR02006 |
Name of clone |
pEFD122 |
| Chromosome |
2 |
Locus |
D2S48 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.1 kb |
| Comment |
|
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10078 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.1 kb Msp I fragment from the cosmid cEFD122 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.3 kb, M2 : 2.1 kb) without a constant band. Not polymorphic for Rsa I, Taq I. |
| RDB No. |
HPR02007 |
Name of clone |
pYNA15.1 |
| Chromosome |
2 |
Locus |
D2S49 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
2.2 kb |
| Comment |
|
Linkage analysis |
ACP D2S1 |
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.2 kb EcoR I fragment from the cosmid cYNA15 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 4.1 kb, M2 : 3.5 kb). Not polymorphic for Taq I, Rsa I. |
| RDB No. |
HPR02009 |
Name of clone |
pCMM63 |
| Chromosome |
2 |
Locus |
D2S51 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.9 kb |
| Comment |
Myoglobin – 2 |
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9361 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.9 kb Rsa I fragment from the cosmid cMM63 (isolated by the oligonucleotides of the myoglobin-2 coding region) was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Taq I, Rsa I, Pst I (M1: 6.0 kb, M2 : 4.5 kb, M3 : 4.4 kb). Not polymorphic for Pvu II. |
| RDB No. |
HPR02010 |
Name of clone |
pEKZ105 |
| Chromosome |
2 |
Locus |
D2S55 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.0 kb |
| Comment |
|
Linkage analysis |
CRYG D2S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10076 (1987) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 3.0 kb Rsa I fragment from the cosmid cEKZ105 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I (R1 : 3.0 kb, R2 : 2.6 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Rsa I, Msp I. |
| RDB No. |
HPR02012 |
Name of clone |
pHHH115.2 |
| Chromosome |
2 |
Locus |
D2S54 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
1.7 kb |
| Comment |
|
Linkage analysis |
APOB D2S6 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10077 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 1.7 kb Msp I fragment from the cosmid cHHH115 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.4 kb, M2 : 1.7 kb) without a constant band. Not polymorphic for Rsa I, Pst I, Bgl II, Pvu II, Taq I. |
| RDB No. |
HPR02013 |
Name of clone |
pMCT106 |
| Chromosome |
2 |
Locus |
D2S61 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
1.7 kb |
| Comment |
VNTR |
Linkage analysis |
ACP D2S1 |
| Reference |
Nucleic Acids Research, 16, 9359 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 1.7 kb Msp I fragment from the cosmid cMCT106 [isolated by the oligonucleotides (GTGTGTGTGTGTGTGTGTGT) ]was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, Msp I, Taq I, Rsa I, Pst I (VNTR polymorphism with bands between 2.0 kb and 3.5 kb) without constant band. |
| RDB No. |
HPR02014 |
Name of clone |
pEFZ38 |
| Chromosome |
2 |
Locus |
D2S60 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
ACP D2S1 |
| Reference |
Nucleic Acids Research, 16, 9360 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Rsa I fragment from the cosmid cEFZ38 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I (R1 : 4.0 kb, R2 : 3.4 kb) without a constant band. Taq I (2.0 kb, 1.7 kb)—this is not yet examined by three generations of family. Not polymolphic for Msp I. |
| RDB No. |
HPR03001 |
Name of clone |
pMS1-37 |
| Chromosome |
3p |
Locus |
(D3S3) |
| Vector |
pBR322 |
Cloning site |
EcoR I – Hind III |
Insert size |
2.5 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 Hum. Genet. 83, 127-132 (1989) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (3.65 – 1.2 kb, 4.85 kb). Not polymorphic for Mbo I, Taq I, EcoR I, Hind III, Pst I, BamH I, Kpn I, Pvu II, Bgl II, Bcl I, Hinc II, Sst I, Xma I, Hae III, BstN I, BstE II, Acc I, Stu I, Rsa I, EcoR V, Sin I, Hinf I, Xba I, Dde I, Nae I. |
| RDB No. |
HPR03002 |
Name of clone |
pYNZ86.1 |
| Chromosome |
3 |
Locus |
D3S30 |
| Vector |
pUC18 |
Cloning site |
Hind III |
Insert size |
3.3 kb |
| Comment |
|
Linkage analysis |
DNF15S2 D3S4 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10079 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.3 kb Hind III fragment from the cosmid cYNZ86 was subcloned into the Hind III site of pUC18. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.0 kb, M2 : 1.9 kb) with constant bands at 2.6 and 1.7 kb. Pvu II (P1 : 1.1 kb, p2 : 0.8 kb) with a constant band at 1.5 kb (This observation has not been verified by pedigree studies). Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, EcoR I, BamH I and Hind III. |
| RDB No. |
HPR03003 |
Name of clone |
pMCT32.1 |
| Chromosome |
3 |
Locus |
D3S31 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.9 kb |
| Comment |
|
Linkage analysis |
CP |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9358 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.9 kb Taq I fragment from the cosmid cMCT32 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 15.0 kb, P2 : 14.0 kb, P3 : 12.0 kb) with constant band at 1.0 kb. Msp I and Taq I (M1 : 10.0 kb,M2 : 7.0 kb and T1 : 5.5 kb, T2 : 2.9 kb) without a constant band (This observation has not been verified by pedigree studies). Not polymorphic for Rsa I, Pst I, Bgl II, EcoR I, BamH I and Hind III. |
| RDB No. |
HPR03004 |
Name of clone |
pEFD145.1(pEFD145) |
| Chromosome |
3 |
Locus |
D3S32 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
4.1 kb |
| Comment |
|
Linkage analysis |
DNF15S2 D3S4 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9357 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.1 kb Taq I fragment from the cosmid cEFD145 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I (R1 : 2.4 kb, M2 : 1.4 kb and 1.0 kb) with a constant band at 0.9 kb. Taq I (T1 : 5.0 kb, T2 : 4.1 kb) without a constant band (This observation has not been verified by pedigree studies). Not polymorphic for Msp I. |
| RDB No. |
HPR03005 |
Name of clone |
pEFD64.1 |
| Chromosome |
3 |
Locus |
D3S42 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
5.2 kb |
| Comment |
VNTR HBV-3 |
Linkage analysis |
APOD |
| Reference |
Nucleic Acids Research, 16, 10947 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.2 kb Taq I fragment of the cosmid cEFD64 (isolated by the oligonucleotides of HBV-3) was subcloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hinf I (VNTR polymorphisms with bands between 0.5kb and 2.5 kb [system 1], or 1.7 kb and 1.9 kb [system 2]). Taq I, Rsa I, Bgl II, EcoR I, BamH I, Hind III and Pvu II (system 1 only). Not polymorphic for Bgl II. |
| RDB No. |
HPR03006 |
Name of clone |
pEFD64.2 |
| Chromosome |
3 |
Locus |
D3S46 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
4.0 kb |
| Comment |
VNTR HBV-3 |
Linkage analysis |
APOD |
| Reference |
Nucleic Acids Research, 16, 9354 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Taq I fragment of the cosmid cEFD 64 (isolated by the oligonucleotides of HBV-3) was subcloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Rsa I, Taq I, EcoR I, BamH I, Hind III and Pvu II (VNTR polymorphism with bands between 2.6 kb and 4.6 kb). Not polymorphic for Bgl II. |
| RDB No. |
HPR03007 |
Name of clone |
pEFD134.7 |
| Chromosome |
3 |
Locus |
D3S45 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
4.3 kb |
| Comment |
VNTR HBV-3 |
Linkage analysis |
APOD |
| Reference |
Nucleic Acids Research, 16, 9355 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.3 kb Msp I fragment of the cosmid cEFD134 (isolated by the oligonucleotides of HBV-3) was subcloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Rsa I and Taq I (VNTR polymorphism with bands between 1.5 kb and 2.7 kb). |
| RDB No. |
HPR04001 |
Name of clone |
pMCOC14 |
| Chromosome |
4p |
Locus |
D4S125(D4S10) |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.5 kb |
| Comment |
VNTR |
Linkage analysis |
D4S10 |
| Reference |
Nucleic Acids Research, 16, 6254 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.5 kb Pst I fragment from the cosmid cMCOC14 [isolated by the oligonucleotides (GGGNGTGGGGGNGTNNNG) ] was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Taq I, Rsa I, Msp I (VNTR polymorphism with bands between 2.5 kb and 2.7 kb) without a constant band. |
| RDB No. |
HPR06001 |
Name of clone |
pHHH157 |
| Chromosome |
6p |
Locus |
D6S29 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
5.5 kb |
| Comment |
|
Linkage analysis |
GLO D6S8 HLA -D D6S10 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 5217 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.5 kb BamH I fragment from the cosmid cHHH157 was subcloned into BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
BamH I (B1 : 13.0 kb, B2 : 5.5 kb). Not polymorphic for Msp I, Rsa I, Taq I, Bgl II, Pst I, Pvu II, EcoR I, Hind III. |
| RDB No. |
HPR06003 |
Name of clone |
p7H4 |
| Chromosome |
6 |
Locus |
D6S7 |
| Vector |
pBR322 |
Cloning site |
EcoR I – Hind III |
Insert size |
2.0 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
EcoR V (11 kb, 10 kb, 9.5 kb, 9.0 kb). BamH I (8 kb, 6 kb). Not polymorphic for Msp I, Taq I, Bal I, Bgl II, Pvu II, EcoR V. |
| RDB No. |
HPR06004 |
Name of clone |
pHHH171 |
| Chromosome |
6p |
Locus |
D6S38 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.3 kb |
| Comment |
|
Linkage analysis |
GLO D6S8 HLA-D D6S10 |
| Reference |
Nucleic Acids Research, 16, 4742 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.3 kb Msp I fragment from the cosmid cHHH171 was subcloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1: 2.3 kb, M2 : 1.9 kb). Not polymorphic for Rsa I, Taq I, Bgl II, Pvu II, EcoR I, Hind III. |
| RDB No. |
HPR06005 |
Name of clone |
pJCZ30 |
| Chromosome |
6 |
Locus |
D6S37 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.0 kb |
| Comment |
VNTR |
Linkage analysis |
D6S2 |
| Reference |
Nucleic Acids Research, 16, 4743 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Rsa I fragment from the cosmid cJCZ30 (isolated with the oligonucleotides of zetaglobin) was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hind III, Msp I, Taq I, Rsa I, Pst I, Pvu II, EcoR I, BamH I (VNTR polymorphism with bands between1.0 kb and 3.0 kb). |
| RDB No. |
HPR06006 |
Name of clone |
pYNZ132 |
| Chromosome |
6 |
Locus |
D6S40 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
1.6 kb |
| Comment |
VNTR Zetaglobin |
Linkage analysis |
D6S2 |
| Reference |
Nucleic Acids Research, 16, 9889 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 1.6 kb Msp I fragment from the cosmid cYNZ132 (isolated with the oligonucleotides of the zetaglobin) was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I, Msp I, Rsa I, Pst I, Pvu II (VNTR polymorphism with bands between 1.2 kb and 1.8 kb). Not polymorphic for Bgl II, EcoR I. |
| RDB No. |
HPR06007 |
Name of clone |
pEFD6 |
| Chromosome |
6 |
Locus |
D6S41 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
D6S2 |
| Reference |
Nucleic Acids Research, 16, 9888 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Pst I fragment from the cosmid cEFD6 (isolated with the oligonucleotides of HBV-3) was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Bgl II, Msp I, Rsa I, Pvu II (VNTR polymorphism with a band 4.0 kb or 3.5 kb). |
| RDB No. |
HPR06008 |
Name of clone |
pTHH5 |
| Chromosome |
6 |
Locus |
D6S39 |
| Vector |
pBR322 |
Cloning site |
Pst I |
Insert size |
5.4 kb |
| Comment |
VNTR HBV – I |
Linkage analysis |
D6S2 |
| Reference |
Human Genome Mapping 9 Genomics, 16, 426-430 (1993) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.4 kb Pst I fragment from the cosmid cTHH5 (isolated with the oligonucleotides of HBV-1) was subcloned into the Pst I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Hind III, Msp I, Taq I, Rsa I, Pst I, Pvu II, Bgl II, EcoR I, BamH I (VNTR polymorphism with bands between 2.5 kb and 4.0 kb). |
| RDB No. |
HPR06009 |
Name of clone |
pMCOB12 |
| Chromosome |
6 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Pst I / Hinc II |
Insert size |
3.8 kb |
| Comment |
VNTR |
Linkage analysis |
D6S2 |
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.8 kb Pst I fragment from the cosmid cMCOB12 (isolated with the oligonucleotides) was subcloned into the Hinc II site of pUC18. |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Hind III, Msp I, Taq I, Rsa I, Pst I, Pvu II, EcoR I, BamH I (VNTR polymorphism with bands between 1.0 kb and 3.0 kb). |
| RDB No. |
HPR06010 |
Name of clone |
p3B10 |
| Chromosome |
6 |
Locus |
|
| Vector |
pBR322 |
Cloning site |
Hind III |
Insert size |
2.0 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
|
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
RL |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Msp I (11 kb, 10 kb, 7 kb). |
| RDB No. |
HPR07001 |
Name of clone |
pRMU7.4 |
| Chromosome |
7p |
Locus |
D7S370 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.3 kb |
| Comment |
|
Linkage analysis |
COL1A2 TCRG |
| Reference |
Nucleic Acids Research, 16, 3591 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.3 kb Msp I fragment from the cosmid cRMU7 [isolated with probe 742 (P. Pers) ] was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 5.5 kb, M2 : 3.4 kb). Not polymorphic for BamH I, EcoR I, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR07002 |
Name of clone |
pTHH28 |
| Chromosome |
7 |
Locus |
D7S371 |
| Vector |
pBR322 |
Cloning site |
Msp I / Cla I |
Insert size |
2.5 kb |
| Comment |
|
Linkage analysis |
COL1A2 TCRG |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 9887 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.5 kb Msp I fragment from the cosmid cTHH28 was subcloned into Cla I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.5 kb, M2 : 2.5 kb). |
| RDB No. |
HPR07003 |
Name of clone |
pYNB3.1 |
| Chromosome |
7q |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
COL1A2 MET TCRB |
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
4.0 kb Rsa I fragment from the cosmid cYNB 3.1 (isolated by pMKA) cloned into Hinc II site for pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I (R1 : 3.8 kb, R2 : 2.4 kb, 1.4 kb). |
| RDB No. |
HPR07004 |
Name of clone |
pCMI37 |
| Chromosome |
7 |
Locus |
D7S368 |
| Vector |
pBR322 |
Cloning site |
Msp I / Cla I |
Insert size |
3.5 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Nucleic Acids Research, 16, 4192 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.5 kb Msp I fragment from the cosmid cCMI37 identified by the oligonucleotides of the insulin coding region cloned into Cla I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
System A : Rsa I (RA1 : 5.5 kb, RA2 : 4.8 kb, RA3 : 4.6 kb). System B : Rsa I, Msp I, Taq I (VNTR polymorphism from 2.5 kb – 3.0 kb). System C : Rsa I (RC1 : 2.4 kb, RC2 : 3.3 kb).Not polymorphic for EcoR I, Hind III, Pvu II, Bgl II, Pst I, BamH I neither detect the site polymorphism nor adequately resolve the VNTR polymorphism. |
| RDB No. |
HPR07005 |
Name of clone |
JCZ67.14I2 |
| Chromosome |
7 |
Locus |
|
| Vector |
|
Cloning site |
|
Insert size |
kb |
| Comment |
|
Linkage analysis |
|
| Reference |
|
Developer |
|
Depositor |
|
| Description |
|
| Host |
|
Genetic Marker |
|
| RFLP |
|
| RDB No. |
HPR07006 |
Name of clone |
HHM232.14J1 |
| Chromosome |
7 |
Locus |
|
| Vector |
|
Cloning site |
|
Insert size |
kb |
| Comment |
|
Linkage analysis |
|
| Reference |
|
Developer |
|
Depositor |
|
| Description |
|
| Host |
|
Genetic Marker |
|
| RFLP |
|
| RDB No. |
HPR08001 |
Name of clone |
pYNM3 |
| Chromosome |
8 |
Locus |
D8S38 |
| Vector |
pUC18 |
Cloning site |
Hind III |
Insert size |
3.0 kb |
| Comment |
VNTR |
Linkage analysis |
D8S5 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10080 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Hind III fragment from the cosmid cYNM 3 (isolated by the oligonucleotides of myoglobin-1 coding region) was subcloned into the Hind III site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Pvu II, EcoR I, Taq I, Rsa I, BamH I, Pst I, Hind III (VNTR polymorphism with bands between 3.2 kb and 3.6 kb). |
| RDB No. |
HPR08002 |
Name of clone |
pMCT128.2 |
| Chromosome |
8 |
Locus |
D8S39 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
3.8 kb |
| Comment |
VNTR |
Linkage analysis |
D8S5 |
| Reference |
Nucleic Acids Research, 16, 3590 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.8 kb Taq I fragment from the cosmid cMCT128 [isolated by the oligonucleotides (GTGTGTGTGTGTGTGTGTGTGT) ]was subcloned into the AccI site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Pvu II, Taq I (VNTR polymorphism with bands between 1.0 kb and 1.6 kb). |
| RDB No. |
HPR09004 |
Name of clone |
pEFD126.3 |
| Chromosome |
9q |
Locus |
D9S7 |
| Vector |
pUC18 |
Cloning site |
BamH I / Acc I |
Insert size |
4.2 kb |
| Comment |
HBV-4 VNTR |
Linkage analysis |
ABO ABL AK1(Adenylate kinase 1) ORM |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10607 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.2 kb BamH I fragment from EFD126 isolated by the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I, Bgl II, Msp I, Pst I, Pvu II, Rsa I (VNTR polymorphism with alleles between 1.5 kb and 2.0 kb). |
| RDB No. |
HPR09005 |
Name of clone |
pMHZ10 |
| Chromosome |
9q |
Locus |
D9S11 |
| Vector |
pGEM4 |
Cloning site |
Pst I |
Insert size |
3.8 kb |
| Comment |
VNTR |
Linkage analysis |
ABO AK1(Adenylate kinase 1) ABL |
| Reference |
Human Genome Mapping 9 NAR, 15, 10609 (1987) Genomics, 3, 361 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.8 kb Pst I fragment from the cosmid cMHZ10 isolated with the oligonucleotides of Z23 was subcloned into the Pst I site of pGEM4. |
| Host |
|
Genetic Marker |
|
| RFLP |
Msp I, EcoR I, Hind III, Pst I, Pvu II (VNTR polymorphism with alleles between 1.4 kb and 2.0 kb). Not polymorphic for Rsa I, Taq I. |
| RDB No. |
HPR09006 |
Name of clone |
pMCOA12 |
| Chromosome |
9q |
Locus |
D9S28 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.0 kb |
| Comment |
|
Linkage analysis |
ABBO AK1 (Adenylate kinase 1) ABL |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 4744 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Msp I fragment from the cosmid cMCOA12 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.0 kb, M2 : 2.5 kb). Taq I also reveals polymorphism, but this observation has not been confirmed by pedigree studies. Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I. |
| RDB No. |
HPR09007 |
Name of clone |
pEFD40.3 |
| Chromosome |
9 |
Locus |
D9S8 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
3.0 kb |
| Comment |
|
Linkage analysis |
ORM( Orosomucoid ) D9S1 AS1 GALT (Galactose 1-P-uridyltransferase) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 15, 10612 (1987) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Taq I fragment from the cosmid cEFD40 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1: 5.3 kb, M2 : 4.4 kb). Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR09008 |
Name of clone |
pEKZ130 |
| Chromosome |
9 |
Locus |
D9S9 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.8 kb |
| Comment |
|
Linkage analysis |
ORM D9S1 AS1 GALT (Galactose 1-P-uridyltransferase) |
| Reference |
Human Genome Mapping 9 NAR, 15, 10611 (1987) Genomics, 3, 361 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.8 kb Taq I fragment from the cosmid cEKZ130 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 6.2 kb, M2 : 4.5 kb). Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR09009 |
Name of clone |
pTHH22 |
| Chromosome |
9q |
Locus |
D9S12 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
3.1 kb |
| Comment |
|
Linkage analysis |
ASSP3 D9S1 GALT (Galactose 1-P-uridyltransferase) |
| Reference |
Human Genome Mapping 9 NAR, 16, 5216 (1988) Genomics, 3, 361 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.1 kb Pst I fragment from the cosmid cTHH22 was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 12.0 kb, T2 : 8.0 kb). Pst I shows a two allele polymorphism showing a high degree of linkage diequilibrium with the Taq I RFLP. Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Msp I, Pvu II, Rsa I. |
| RDB No. |
HPR09010 |
Name of clone |
pEKZ19.3 |
| Chromosome |
9q |
Locus |
D9S17 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
3.2 kb |
| Comment |
|
Linkage analysis |
ABO AK1 (Adenylate kinase 1) ABL |
| Reference |
Human Genome Mapping 9 NAR, 15, 10610 (1987) Gemomics, 3, 361 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb Taq I fragment into the Acc I site of pUC 18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 3.2 kb, T2 : 2.5 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Pvu II, Rsa I. |
| RDB No. |
HPR09011 |
Name of clone |
pMHZ21 |
| Chromosome |
9 |
Locus |
|
| Vector |
pGEM3 |
Cloning site |
Hind III |
Insert size |
2.6 kb |
| Comment |
RW-254 VNTR |
Linkage analysis |
|
| Reference |
Nucleic Acids Research, 16, 10409 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.6 kb Hind III fragment from the cosmid MHZ21 (isolated by the oligonucleotides of zetaglobin coding region) into Hind III site of pGEM3. |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Msp I, Taq I, Rsa I, Pst I, Pvu II (VNTR polymorphism with a band between 0.8 kb and 1.2 kb) without constant band. |
| RDB No. |
HPR10001 |
Name of clone |
pHHH105.1 |
| Chromosome |
10 |
Locus |
D10S13 |
| Vector |
pUC18 |
Cloning site |
Pvu II / Hinc II |
Insert size |
2.1 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.1 kb Pvu II fragment from the cosmid cHHH105 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Bgl II (B1 : 9.0 kb, B2 : 8.0 kb) with a constant band at 6.0 kb. Pvu II, Pst I also appear polymorphic, but these observations have not been verified by pedigree studies. Not polymorphic for EcoR I, BamH I, Hind III. |
| RDB No. |
HPR10003 |
Name of clone |
pMCK2 |
| Chromosome |
10 |
Locus |
D10S15 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.0 kb |
| Comment |
VNTR |
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 374 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.0 kb Msp I fragment from the cosmid cMCK2 [isolated by the oligonucleotides (GTGTGTGTGTGTGTGTGTGTGT) ] was subcloned into the Acc I site of pUC18. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Rsa I, Msp I, Pst I, Pvu II (VNTR polymorphism with bands between 0.8 kb and 1.2 kb) without a constant band. Not polymorphic for Taq I, Bgl II. |
| RDB No. |
HPR10004 |
Name of clone |
pCMM17.1 |
| Chromosome |
10 |
Locus |
D10S16 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.5 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 3121 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.5 kb Msp I fragment from the cosmid cCMM17 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.3 kb, M2 : 1.5 kb) without a constant band. Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, Pvu II. |
| RDB No. |
HPR10005 |
Name of clone |
pCMM17.4 |
| Chromosome |
10 |
Locus |
D10S23 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.2 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 4190 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.2 kb Msp I fragment from the cosmid cCMM17 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 4.3 kb, P2 : 3.2 kb) with a constant band at 2.3 kb. Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, Msp I. |
| RDB No. |
HPR10006 |
Name of clone |
pMHZ15 |
| Chromosome |
10 |
Locus |
D10S17 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.5 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 373 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.5 kb Msp I fragment from the cosmid cMHZ15 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.5 kb, M2 : 2.1 kb) without a constant band. Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, Pvu II. |
| RDB No. |
HPR10007 |
Name of clone |
pYNZ156 |
| Chromosome |
10 |
Locus |
D10S18 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
4.6 kb |
| Comment |
|
Linkage analysis |
D10 S1 D10 S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 375 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.6 kb EcoR I fragment from the cosmid cYNZ156 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 11.5 kb, M2 : 9.6 kb) without a constant band. Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, Pvu II. |
| RDB No. |
HPR10008 |
Name of clone |
pTB10.171 |
| Chromosome |
10 |
Locus |
D10S19 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
1.9 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 4187 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 1.9 kb EcoR I fragment from phage TB10.171 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 8.0 kb, P2 : 6.5 kb) without a constant band. Not polymorphic for Taq I, Rsa I, Pst I, Bgl II, Msp I. |
| RDB No. |
HPR10009 |
Name of clone |
TBQ10.163 |
| Chromosome |
10 |
Locus |
D10S22 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
2.7 kb |
| Comment |
|
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Genomics, 2, 157 (1988) Nucleic Acids Research, 16, 4185 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.7 kb EcoR I fragment from phage TB10.163 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 15.0 kb, M2 : 12.0 kb, M3 : 8.0 kb) without a constant band. Not poolymorphic for Taq I, Rsa I, Pst I, Bgl II, Pvu II. |
| RDB No. |
HPR10010 |
Name of clone |
EFD70.2 |
| Chromosome |
10q |
Locus |
D10S26 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
2.6 kb |
| Comment |
HBV – 3 VNTR |
Linkage analysis |
|
| Reference |
Genomics, 2, 157 (1988) Nucleic Acids Research, 16, 10407 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.6 kb Pst I fragment from the cosmid cEFD70 (isolated by the oligonucleotides of HBV-3) was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, Pst I (VNTR polymorphism with bands between 1.5 kb and 3.0 kb) without a constant band. Not polymorphic for Bgl II. |
| RDB No. |
HPR10012 |
Name of clone |
pEFD75 |
| Chromosome |
10 |
Locus |
D10S |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.4 kb |
| Comment |
HBV – 3 VNTR |
Linkage analysis |
D10S1 D10S4 IRBP (Intestitial retinol binding protein) |
| Reference |
Genomics, 2, 157 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb Taq I fragment from the cosmid cEFD75 (isolated by the oligonucleotides of HBV-3) was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Tet |
| RFLP |
Taq I, Rsa I, Pvu II, EcoR I, Hind III, Pst I (VNTR polymorphism with bands between 2.0 kb and 3.0 kb) without constant band. Not polymorphic for Bgl II, Msp I. |
| RDB No. |
HPR11002 |
Name of clone |
pMCT128.1 |
| Chromosome |
11q |
Locus |
D11S285 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
PGA APOA1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 378 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Taq I fragment from the cosmid cMCT128 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.9 kb, M2 : 2.6 kb). Not polymorphic for Bgl II, Pvu II, Taq I. |
| RDB No. |
HPR11003 |
Name of clone |
pMCT117 |
| Chromosome |
11q |
Locus |
D11S145 |
| Vector |
pUC18 |
Cloning site |
Bal II / BamH I |
Insert size |
2.4 kb |
| Comment |
|
Linkage analysis |
PGA APOA1 |
| Reference |
Nucleic Acids Research, 16, 4745 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb Bgl II fragment from the cosmid cMCT117 was subcloned into the BamH I site of pUC18. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.9 kb, M2 : 2.7 kb, M3 : 2.5 kb). Taq I also polymorphic but this has not been examined by family studies. Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I. |
| RDB No. |
HPR11004 |
Name of clone |
pHBI59 |
| Chromosome |
11 |
Locus |
D11S146 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
1.6 kb |
| Comment |
|
Linkage analysis |
PGA |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 376 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 1.6 kb Msp I fragment from the cosmid cHB159 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1: 4.3 kb, M2 : 3.8 kb, 0.5 kb). Taq I also polymorphism but this observation has not been verified by pedigree studies. Not polymorphic for Bgl II, Pst I, Pvu II, Rsa I. |
| RDB No. |
HPR11005 |
Name of clone |
pHBI18P2 |
| Chromosome |
11 |
Locus |
D11S147 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
PGA APOA1 D11S29 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 377 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Pst I fragment from the cosmid cHBI18P2 was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I (P1 : 5.0 kb, P2 : 4.0 kb). Not polymorphic for Pvu II, BamH I, Bgl II, EcoR I, Hind III, Msp I, Rsa I, Taq I. |
| RDB No. |
HPR11006 |
Name of clone |
pYNB3.12 |
| Chromosome |
11 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.4 kb |
| Comment |
Band III |
Linkage analysis |
PGA |
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb Msp I fragment from the cosmid cYNB3.12 (isolated with Band III cDNA) and subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.8 kb, M2 : 2.4 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR11007 |
Name of clone |
pTHH26 |
| Chromosome |
11 |
Locus |
D11S149 |
| Vector |
pUC18 |
Cloning site |
Pvu II / Hinc II |
Insert size |
3.0 kb |
| Comment |
|
Linkage analysis |
PGA APOA1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 4746 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.0 kb Pvu II fragment from the cosmid cTHH26 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 5.2 kb, P2 : 3.0 kb). Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Rsa I, Taq I. |
| RDB No. |
HPR12001 |
Name of clone |
p7G11 |
| Chromosome |
12 |
Locus |
D12S8 |
| Vector |
pBR322 |
Cloning site |
EcoR I – Hind III |
Insert size |
1.0 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 7.0 kb, M2 : 6.0 kb). |
| RDB No. |
HPR12002 |
Name of clone |
pYNH15 |
| Chromosome |
12q |
Locus |
D12S17 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.2 kb |
| Comment |
|
Linkage analysis |
D12S6 D12 S4 COLL2A1 D12S2 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 779 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb Msp I fragment from the cosmid cYNH15 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 4.0 kb, M2 : 3.2 kb, M3 : 2.6 kb). Rsa I (R1 : 3.0 kb, R2 : 1.7 kb) but this has not been tested in pedigree studies. Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Pvu II, Taq I. |
| RDB No. |
HPR12003 |
Name of clone |
pEFD33.2 |
| Chromosome |
12 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
3.2 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 778 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb Taq I fragment from the cosmid cEFD33 cloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (A1 : 3.2 kb, A2 : 4.3 kb). Msp I (M1 : 3.2 kb, M2 : 7.0 kb, M3 : 9.0 kb). EcoR I (E1 : 6.2 kb, E2 : 6.0 kb). Not polymorphic for Rsa I, Bgl II, Pst I, Pvu II, BamH I, Hind III. |
| RDB No. |
HPR12004 |
Name of clone |
pTHIZ53 |
| Chromosome |
12 |
Locus |
D12S18 |
| Vector |
pBR322 |
Cloning site |
EcoR I – Sal I / Cla I |
Insert size |
2.3 kb |
| Comment |
|
Linkage analysis |
D12S4 COL2A1 D12S2 KRAS2 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 5701 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.3 kb EcoR I / Sal I fragment from the cosmid cTHIZ53 was subcloned into the Cla I site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Rsa I, BamH I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Pvu II, Taq I resolve the 2 allele insertion / deletion (R1 : 2.4 kb, R2 : 2.2 kb). |
| RDB No. |
HPR13007 |
Name of clone |
pMHZ17 |
| Chromosome |
13q |
Locus |
D13S51 |
| Vector |
pGEM4 |
Cloning site |
Taq I / Acc I |
Insert size |
4.2 kb |
| Comment |
|
Linkage analysis |
D13S6 D13S1 ESD D13S4 |
| Reference |
Nucleic Acids Research, 16, 10401 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.2 kb Taq I fragment isolated from the cosmid MHZ17 has been subcloned into Acc I site of pGEM4. |
| Host |
|
Genetic Marker |
|
| RFLP |
Taq I (T1 : 4.2 kb, H2 : 3.2 kb). Not polymorphic for Msp I, Rsa I, Pst I, Pvu II, Bgl II. |
| RDB No. |
HPR13008 |
Name of clone |
pYNH20 |
| Chromosome |
13 |
Locus |
D13S50 |
| Vector |
pUC18 |
Cloning site |
Hind III |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
D13S6 D13S1 ESD D13S4 |
| Reference |
NAR, 16, 10402 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Hind III fragment isolated from the cosmid YNN20 has been subcloned into Hind III site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hind III (H1 : 11.0 kb, H2 : 7.5 kb). Not polymorphic for Msp I, Taq I, Rsa I, Pst I, Pvu II, Bgl II. |
| RDB No. |
HPR13009 |
Name of clone |
pTHI62 |
| Chromosome |
13 |
Locus |
|
| Vector |
pBR322 |
Cloning site |
Hind III |
Insert size |
12.0 kb |
| Comment |
VNTR |
Linkage analysis |
D13S6 D13S1 ESD D13S4 |
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 12.0 kb Hind III fragment from the phage THI62 (isolated by the oligonucleotides of insulin coding region) was subcloned into the Hind III site of pBR322. |
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Bgl II, Msp I, Taq I, Rsa I, Pvu II, Pst I, EcoR I, BamH I, Hind III (VNTR polymorphism with allele between 6.0 kb and 9.0 kb) and a large number of non-polymorphic bands above and below the VNTR region. |
| RDB No. |
HPR14001 |
Name of clone |
pAW101 |
| Chromosome |
14 |
Locus |
D14S1 |
| Vector |
pBR322 |
Cloning site |
EcoR I |
Insert size |
5.0 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Genomics, 4, 76 (1989)
Human Genome Mapping 9 PNAS, 77, 6754 (1980) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
EcoR I (* major DNA fragments between 14 kb and 29 kb with many minor bands). |
| RDB No. |
HPR14002 |
Name of clone |
pEFZ18.2 |
| Chromosome |
14 |
Locus |
D14S17 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
3.5 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 380 (1988) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
|
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
|
| RDB No. |
HPR14004 |
Name of clone |
pTHH37 |
| Chromosome |
14 |
Locus |
D14S16 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
2.4 kb |
| Comment |
HBV – 1 |
Linkage analysis |
D14S1 GM PI |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 3593 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb Pst I fragment from the cosmid cTHH37 (isolated by the oligonucleotides of HBV-1) was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Taq I, Msp I (P1 : 3.0 kb, P2 : 2.4 kb, P3 : 2.1 kb). |
| RDB No. |
HPR14006 |
Name of clone |
pCMM62 |
| Chromosome |
14q |
Locus |
D14S21 |
| Vector |
pUC18 |
Cloning site |
Pvu II / Hinc II |
Insert size |
3.1 kb |
| Comment |
|
Linkage analysis |
GM D14S1 PI |
| Reference |
Nucleic Acids Research, 16, 5220 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.1 kb Pvu II fragment from the cosmid cCMM62 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hind III (H1 : 4.0 kb, H2 : 2.5 kb). Not polymorphic for Msp I, Taq I, Bgl II, Pst I, Pvu II, Rsa I. |
| RDB No. |
HPR14007 |
Name of clone |
pCMM66 |
| Chromosome |
14q |
Locus |
D14S22 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
4.8 kb |
| Comment |
Myoglobin VNTR |
Linkage analysis |
D14S1 GM PI |
| Reference |
Nucleic Acids Research, 16, 6255 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.8 kb Taq I fragment from the cosmid cCMM66 isolated by the oligonucleotides of myoglobin-2 coding regin was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Rsa I (VNTR polymorphism with a band between 4.0 kb and 6.0 kb) with constant band at 1.5 kb and 1.2 kb. Not polymorphic for Rsa I, Taq I. |
| RDB No. |
HPR14008 |
Name of clone |
pMCOC12 |
| Chromosome |
14 |
Locus |
D14S20 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
3.4 kb |
| Comment |
VNTR |
Linkage analysis |
D14S1 GM PI |
| Reference |
Nucleic Acids Research, 16, 6257 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura and R. White |
| Description |
A 3.4 kb Pst I fragment from the cosmid cMCOC12 [isolated by the oligonucleotides (GAGGGTGGGGGNTCNNNG) ] was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Rsa I, Taq I, Hae III, Pst I (VNTR polymorphism with a band between 1.0 kb and 2.0 kb). |
| RDB No. |
HPR14009 |
Name of clone |
pCMM101 |
| Chromosome |
14 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.2 kb |
| Comment |
Myoglobin – 2 |
Linkage analysis |
|
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.2 kb Msp I fragment from the cosmid cCMM101 (isolated by the oligonucleotides of myoglobin-2 coding region) cloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Taq I, Rsa I, Bgl II, Pst I (> 10 allele polymorphism with a band between 1.5 kb and 6.0 kb without constant band). |
| RDB No. |
HPR15001 |
Name of clone |
pTHH114 |
| Chromosome |
15q |
Locus |
D15S25 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
2.4 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb Rsa I fragment from the cosmid cTHH114 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Rsa I (R1 : 2.5 kb, R2 : 2.4 kb). Not polymorhic for BamH I, Bgl II, EcoR I, Hind III, Msp I, Pst I, Pvu II, Taq I. |
| RDB No. |
HPR15002 |
Name of clone |
pMCT46.2 |
| Chromosome |
15q |
Locus |
D15S26 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
5.3 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 1226 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 5.3 kb BamH I fragment from the cosmid cMCT46 was subcloned into the BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 5.9 kb, P2 : 5.3 kb). Not polymorphic fore Msp I, TaqU I, Rsa I, Bgl II, Pst I. |
| RDB No. |
HPR15003 |
Name of clone |
pTHH55 |
| Chromosome |
15q |
Locus |
D15S27 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
7.0 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 10945 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 7.0 kb BamH I fragment from the cosmid cTHH55 was subcloned into the BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 4.5 kb, M2 : 3.3 kb, M3 : 1.2 kb) with constant bands at 2.6 kb, 0.85 kb, 0.80 kb. Not polymorphic for BamH I, Bgl II, EcoR I, Hind III, Rsa I, Taq I. |
| RDB No. |
HPR15004 |
Name of clone |
pYNZ90 (pYNZ90.1) |
| Chromosome |
15 |
Locus |
D15S28 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
6.0 kb |
| Comment |
|
Linkage analysis |
D15S2 D15S1 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 780 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 6.0 kb BamH I fragment from the cosmid cYNZ90 was subcloned into the BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
BamH I (B1 : 6.0 kb, B2 : 5.8 kb). Bgl II, Rsa I appear to be polymorphic, but, this observation has not been verified by pedigree studies. Not polymorphic for EcoR I, Hind III, Msp I, Pst I, Pvu II, Taq I. |
| RDB No. |
HPR15005 |
Name of clone |
pEFD49.3 |
| Chromosome |
15q |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.0 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 10944 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.0 kb Msp I fragment from the cosmid cEFD49 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.0 kb, M2 : 2.1 kb, M3 : 2.0 kb) without a constant band. Taq I (T1 : 2.45 kb, T2 : 2.1 kb, T3 : 2.0 kb) without a constant band. Not polymorphic for Rsa I. |
| RDB No. |
HPR15006 |
Name of clone |
pEFD49.2 |
| Chromosome |
15 |
Locus |
D15S38 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.8 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.8 kb Msp I fragment from the cosmid cEFD49 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1: 4.4 kb, T2 : 2.3kb, T3 : 2.1 kb) without a constant band. Msp I (M1 : 3.7 kb, M2 : 2.8 kb). Not polymorphic for Rsa I. |
| RDB No. |
HPR15007 |
Name of clone |
pEKZ104.1 |
| Chromosome |
15q |
Locus |
D15S30 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
4.0 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 1224 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Msp I fragment from the cosmid cEKZ104 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 4.0 kb, M2 : 3.7 kb). Bgl II, EcoR I also appear polymorphic, but these observation has been not verified by pedigree studies. |
| RDB No. |
HPR15008 |
Name of clone |
pMCA1-1 |
| Chromosome |
15q |
Locus |
D15S33 |
| Vector |
pUC18 |
Cloning site |
Pvu II / Hinc II |
Insert size |
4.6 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 1225 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.6 kb Pvu II fragment from the cosmid cMCA1 – 1 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 5.7 kb, P2 : 5.2 kb). Not polmorphic for BamH I, Bgl II, EcoR I, Hind III, Pst I, Rsa I, Taq I. |
| RDB No. |
HPR15010 |
Name of clone |
pMCT149.2 |
| Chromosome |
15q |
Locus |
D15S34 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.0 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Genomics, 3, 342-346 (1988) Nucleic Acids Research, 16, 10941 (1988) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 3.0 kb Msp I fragment from the cosmid cMCT149 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.0 kb, M2 : 2.0 kb) without a constant band. Taq I (T1 : 2.4 kb, T2 : 1.2 kb) without a constant band, but this has not verified by our three generation families. Not polymorphic for Rsa I. |
| RDB No. |
HPR15011 |
Name of clone |
pEFD85.7 |
| Chromosome |
15q |
Locus |
D15S37 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
2.4 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Gemomics, 3, 342-346 (1988) Nucleic Acids Research, 16, 6256 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.4 kb EcoR I fragment from the cosmid cEFD85 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
EcoR I (E1: 4.3 kb, E2 : 2.4 kb) without a constant band. Not polymorphic for BamH I, Bgl II, Msp I, Hind III, Rsa I, Taq I. |
| RDB No. |
HPR15012 |
Name of clone |
pEFD52.1 |
| Chromosome |
15q |
Locus |
D15S44 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.3 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Genomics, 3, 342-346 (1988) Nucleic Acids Research, 16, 10942 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.3 kb Taq I fragment from the cosmid cEFD52 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 2.1 kb, M2 : 1.4 kb + 0.7 kb) without a constant band. Not polymorphic for Taq I, Rsa I. |
| RDB No. |
HPR15013 |
Name of clone |
pYNM18.1 |
| Chromosome |
15q |
Locus |
D15S35 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
6.6 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Genomics, 3, 342-346(1988) Nucleic Acids Research, 16, 3592 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 6.6 kb Pst I fragment from the cosmid cYNM18 was subcloned into the Pst I site of pUC18. |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 4.8 kb, T2 : 4.4 kb, T3 : 4.3 kb) with constant bands at 2.0 kb, 4.0 kb. Msp I (M1 : 3.3 kb, M2 : 2.6 kb) with constant bands at 0.8 kb, 0.7 kb, but this has not verified by our three generation families . Not polymorphic for Rsa I, Bgl II, Pvu II, Pst I. |
| RDB No. |
HPR15014 |
Name of clone |
pEFZ33 |
| Chromosome |
15q |
Locus |
D15S45 |
| Vector |
pUC18 |
Cloning site |
EcoR I / Acc I |
Insert size |
2.3 kb |
| Comment |
|
Linkage analysis |
D15S1 D15S2 D15S3 |
| Reference |
Genomics, 3, 342-346(1988) Nucleic Acids Research, 16, 10946 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.3 kb EcoR I fragment from the cosmid cEFZ33 was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hind III (H1 : 4.0 kb, H2 : 3.7 kb) without a constant band. |
| RDB No. |
HPR16001 |
Name of clone |
pEKXp3B |
| Chromosome |
16 |
Locus |
|
| Vector |
Okayama – Berg expression vector |
Cloning site |
Xho I |
Insert size |
1.1 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
|
Genetic Marker |
Amp |
| RFLP |
BamH I, EcoR I, Pvu II, Bgl II, Hind III, Taq I. |
| RDB No. |
HPR16002 |
Name of clone |
pCMM65 |
| Chromosome |
16 |
Locus |
D16S84 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.2 kb |
| Comment |
Myoglobin – 2 |
Linkage analysis |
HBZP1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 3122 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb Rsa I fragment from the cosmid cCMM65 (isolatid by the oligonucleotides of myoglobin-2) was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Taq I, Rsa I, Bgl II, Pst I, EcoR I, BamH I, Hind III, Pvu II (VNTR polymorphism with a band at 1.5 kb or 1.3 kb) without a constant band. |
| RDB No. |
HPR16003 |
Name of clone |
pEKMDA2-I |
| Chromosome |
16 |
Locus |
D16S83 |
| Vector |
pUC18 |
Cloning site |
Rsa I / Hinc II |
Insert size |
3.5 kb |
| Comment |
VNTR |
Linkage analysis |
HBZP1 |
| Reference |
Nucleic Acids Research, 16, 9885 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.5 kb Rsa I fragment from the cosmid cEKMDA2 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hinf I, Taq I, Rsa I, Bgl II, Pst I, EcoR I, BamH I, Hind III, Pvu II (VNTR polymorphism with bands between 0.8 kb and 1.5 kb). |
| RDB No. |
HPR16004 |
Name of clone |
pMCOC36 |
| Chromosome |
16 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Bal II / BamH I |
Insert size |
6.4 kb |
| Comment |
VNTR RW – 304 |
Linkage analysis |
|
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 6.4 kb Bgl II fragment from the cosmid cMCO36 (isolated by the oligonucleotides) cloned into BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, Rsa I, Taq I, Hae III, Pst I (M1 : 1.1 kb, M2 : 2.0 kb) without a constamt band. |
| RDB No. |
HPR16005 |
Name of clone |
pKKA22 |
| Chromosome |
16 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
2.8 kb |
| Comment |
VNTR RW – 332 |
Linkage analysis |
|
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.8 kb Msp I fragment fron the cosmid cKKA22 cloned into Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I (A1 : 13.0 kb, A2 : 6.0 kb, A3: 4.4 kb) with constant band at 7.0 kb. Not polymorphic for Msp I, Taq I, Rsa I, Pvu II, Bgl II. |
| RDB No. |
HPR17003 |
Name of clone |
pRMU3 |
| Chromosome |
17 |
Locus |
D17S24 |
| Vector |
pUC18 |
Cloning site |
BamH I-Sac I |
Insert size |
2.0 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Nucleic Acids Research, 16, 784 (1988) |
Developer |
|
Depositor |
|
| Description |
|
| Host |
|
Genetic Marker |
|
| RFLP |
|
| RDB No. |
HPR17005 |
Name of clone |
pRMU1 |
| Chromosome |
17q |
Locus |
D17S27 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
2.0 kb |
| Comment |
|
Linkage analysis |
D17Z1 TK1 pTHH59 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 785 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 2.0 kb BamH I fragment from the cosmid cRMU1 was subcloned into the BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I (P1 : 2.0 kb, P2 : 1.0 kb) with a constant band at 4.0 kb. Not polymorphic for Msp I, Taq I, Rsa I, EcoR I, Hind III, BamH I, Pvu II, Bgl II. |
| RDB No. |
HPR17006 |
Name of clone |
pHHH152 |
| Chromosome |
17q |
Locus |
D17S32 |
| Vector |
pUC18 |
Cloning site |
BamH I |
Insert size |
7.0 kb |
| Comment |
|
Linkage analysis |
D17Z1 TK1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 787 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 7.0 kb BamH I fragment from the cosmid cHHH152 subcloned into BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
BamH I (B1 : 10.5 kb, B2 : 9.6 kb) with a constant band at 2.6 kb. Not polymorphic for Bgl II, EcoR I, Hind III, Msp I, Pst I, Pvu II, Rsa I, Taq I. |
| RDB No. |
HPR17008 |
Name of clone |
pCMM86 |
| Chromosome |
17p |
Locus |
D17S74 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
4.3 kb |
| Comment |
Myoglobin VNTR |
Linkage analysis |
D17S1 MYH2 D17Z1 |
| Reference |
Human Genome Mapping 9
Nucleic Acids Research, 16, 5223 (1988) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 4.3 kb Msp I fragment from the cosmid cCNN86 (isolated by the oligonucleotides of myoglobin-2) was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hinf I, Taq I, Msp I, Rsa I, Bgl II (VNTR polymorphism with bands between 1.0 kb and 5.0 kb). Not polymorphic for Pst I. |
| RDB No. |
HPR17009 |
Name of clone |
pJCZ16.2 |
| Chromosome |
17 |
Locus |
|
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
4.3 kb |
| Comment |
Zetaglobin, VNTR, RW – 208 |
Linkage analysis |
|
| Reference |
|
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.3 kb Pst I fragment from the cosmid cJCZ3 (isolated by the oligonucleotides of zetaglobin) cloned into Pst I site of pUC18. |
| Host |
|
Genetic Marker |
Amp |
| RFLP |
Taq I, Hinf I, Msp I, Rsa I, Bgl II, Pst I, Pvu II, BamH I (VNTR polymorphism between 2.0 kb and 3.3 kb). |
| RDB No. |
HPR18001 |
Name of clone |
pMS1-3 |
| Chromosome |
18q |
Locus |
D18S19 |
| Vector |
pUC18 |
Cloning site |
EcoR I – Hind III |
Insert size |
1.3 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 Genomics, 3, 367 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I, Bcl I, BstN I Not polymorphic for Mbo I, Msp I, Taq I, EcoR I, Hind III, BamH I, Pvu II, Bgl II Hinc II, Nci I, Sst I, Xma I, Hae III, Acc I, Rsa I, EcoR V, Alu I, Sin I, Hinf I, Xba I, Dde I, Apa I, Nco I, Tth I, Xma I, Bst I,Taq II. |
| RDB No. |
HPR18002 |
Name of clone |
pEFZ10 |
| Chromosome |
18 |
Locus |
D18S20 |
| Vector |
pUC18 |
Cloning site |
Pvu II / Hinc II |
Insert size |
3.8 kb |
| Comment |
VNTR |
Linkage analysis |
D18S1 D18S3 |
| Reference |
Human Genome Mapping 9 NAR, 16, 1227 (1988) Genomics, 3, 367 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.8 kb Pvu II fragment from the cosmid cEFZ10 was subcloned into the Hinc II site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II, Pst I (VNTR polymorphism with bands between 2.5 kb and 5.0 kb) with a constant band at 2.0 kb. Not polymorphic for Msp I, Bgl II. |
| RDB No. |
HPR18003 |
Name of clone |
pHHH163 |
| Chromosome |
18 |
Locus |
D18S21 |
| Vector |
pUC18 |
Cloning site |
EcoR I |
Insert size |
3.2 kb |
| Comment |
|
Linkage analysis |
D18S1 D18S3 |
| Reference |
Human Genome Mapping 9 NAR, 16, 4189 (1988) Genomics, 3, 367 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb EcoR I fragment from the cosmid cHHH163 was subcloned into the EcoR I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pvu II (P1 : 4.7 kb, P2 : 2.8 kb) without a constant band. Not polymorphic for Msp I, Taq I, Rsa I, Pst I, EcoR I, Hind III, BamH I, Bgl II. |
| RDB No. |
HPR18004 |
Name of clone |
pMCT108.2 |
| Chromosome |
18 |
Locus |
D18S24 |
| Vector |
pUC18 |
Cloning site |
Msp I |
Insert size |
3.2 kb |
| Comment |
|
Linkage analysis |
D18S1 D18S3 |
| Reference |
Genomics, 3, 367 (1988) Nucleic Acids Research, 16, 4188 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.2 kb Msp I fragmen from MCT108 was subcloned into the Msp I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.2 kb, M2 : 2.3 kb) without a constant band. Taq I (T1 : 3.8 kb,T2 : 2.3 kb) but this has noty veified with verifiedfamily studies. Not polymorphic for Rsa I, Pst I, Pvu II, Bgl II. |
| RDB No. |
HPR19001 |
Name of clone |
pJCZ3.1 |
| Chromosome |
19 |
Locus |
D19S20 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
4.5 kb |
| Comment |
Zetaglobin VNTR |
Linkage analysis |
LDLA APOC2 |
| Reference |
Human Genome Mapping 9 Genomics, 3, 67-71 (1988) NAR, 16, 1229 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.5 kb Pst I fragment from the cosmid cJCZ3 (isolatid by the oligonucleotides of zetaglobin) was subcloned into the Pst I site of pUC 18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Hinf I, Msp I, Taq I, Rsa I, Bgl II, Pst I, Pvu II (VNTR polymorphism with bands between 1.5 kb and 4.0 kb) without a constant band. |
| RDB No. |
HPR19004 |
Name of clone |
pMCT6 |
| Chromosome |
19 |
Locus |
D19S24 |
| Vector |
pUC18 |
Cloning site |
BamH I- EcoR I |
Insert size |
7.7 kb |
| Comment |
Dora, RW – 10 |
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 Genomics, 3, 67-71(1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Bgl II, Msp I, Taq I, Rsa I, Bgl II, Pst I, Pvu II (9-3 kb). EcoR I (5.2 kb, 5.0 kb, 4.3 kb). BamH I (20 kb, 15.5 kb, 14.7 kb, 10.4 kb, 5.3 kb, 5.2 kb, 3.4 kb, 2.2kb). |
| RDB No. |
HPR20001 |
Name of clone |
pMS1-27 |
| Chromosome |
20 |
Locus |
D20S4 (D0SLC2) |
| Vector |
pBR322 |
Cloning site |
EcoR I – Hind III |
Insert size |
1.2 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Human Genome Mapping 9 |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
|
| Host |
HB101 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 1.5 kb, M2 : 6.5 kb). Not polymorphic for Mbo I, Taq I, EcoR I, Hind III, BamH I, Kpn I, Pvu II, Hinc II, Pst I, Nci I, Sst I, Xma I, Hae III, Bst N I, BgtE II,Acc I, Stu I, Rsa I, EcoR V, Alu I, Sin I, Hinf I, Xba I, Sau3A, Dde I, Nae I. |
| RDB No. |
HPR20002 |
Name of clone |
pCMM6 |
| Chromosome |
20 |
Locus |
D20S19 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
4.0 kb |
| Comment |
Myoglobin VNTR |
Linkage analysis |
D20S1 |
| Reference |
Nucleic Acids Research, 16, 5222 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 4.0 kb Pst I fragment from the cosmid cCMM6 (isolated by the oligonucleotides of myoglobin-1) was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I, Msp I, Rsa I, Pvu II, Pst I (VNTR polymorphism with a band between 2.3 kb and 6.0 kb). |
| RDB No. |
HPR20003 |
Name of clone |
pRMR6 |
| Chromosome |
20 |
Locus |
D20S20 |
| Vector |
pUC18 |
Cloning site |
Bgl II / BamH I |
Insert size |
7.5 kb |
| Comment |
|
Linkage analysis |
D20S1 |
| Reference |
Nucleic Acids Research, 16, 9883 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 7.5 kb Bgl II fragment from the cosmid cRMR6 was subcloned into the BamH I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Taq I (T1 : 2.5 kb, T2 : 2.3 kb) with a constant band at 1.5 kb. Not polymorphic for Msp I, Rsa I, Bgl II, Pst I, Pvu II, EcoR I, BamH I, Hind III. |
| RDB No. |
HPR21001 |
Name of clone |
pMCT15 |
| Chromosome |
21 |
Locus |
D21S113 |
| Vector |
pUC18 |
Cloning site |
Taq I / Acc I |
Insert size |
2.7 kb |
| Comment |
|
Linkage analysis |
|
| Reference |
Nucleic Acids Research, 16, 9882 (1988) |
Developer |
|
Depositor |
Y. Nakamura and R. White |
| Description |
A 2.7 kb TaqI fragment from the cosmid cMCT15 [isolated by the oligonucleotides (GTGTGTGTGTGTGTGTGTGTGT) ] was subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I, BamH I, Pst I, Pvu II, Taq I (VNTR polymorphism with bands between 1.2 kb and 1.6 kb). |
| RDB No. |
HPR21002 |
Name of clone |
pEFD70.3 |
| Chromosome |
21 |
Locus |
D21S412 |
| Vector |
pUC18 |
Cloning site |
Pst I |
Insert size |
1.3 kb |
| Comment |
|
Linkage analysis |
D18S1 D18S3 |
| Reference |
Hum. Mol. Genet. 2, 331 (1993) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura and R. White |
| Description |
A 1.3 kb Pst I fragment from the cosmid cEFD70 was subcloned into the Pst I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Pst I (P1 : 1.5 kb, P2 : 1.3 kb). Not polymorphic for Msp I, Taq I, Rsa I, Pvu II, EcoR I, Hind III, BamH I, Bgl II. |
| RDB No. |
HPR22001 |
Name of clone |
pEFDZ31 |
| Chromosome |
22 |
Locus |
D22S32 |
| Vector |
pUC18 |
Cloning site |
Msp I / Acc I |
Insert size |
3.1 kb |
| Comment |
|
Linkage analysis |
D21S1 |
| Reference |
Nucleic Acids Research, 16, 5221 (1988) |
Developer |
Y. Nakamura and R. White |
Depositor |
Y. Nakamura |
| Description |
A 3.1 kb Msp I fragment from the cosmid EFZ31 subcloned into the Acc I site of pUC18. |
| Host |
JM109 |
Genetic Marker |
Amp |
| RFLP |
Msp I (M1 : 3.5 kb, M2 : 2.6 kb). Not polymorphic for Rsa I, Bgl II, Pst I, Pvu II, BamH I, Hind III, EcoR I. |
|
