Resource data sheet
Prev.
Please review the QC test results indicated by check icon below as well as clone information before placing your order.

pMK364 (CMV-OsTIR1-loxP-PURO-loxP)

A donor vector for introducing CMV-OsTIR1 at the human AAVS1 locus.

Catalog number RDB16811
Resource name pMK364 (CMV-OsTIR1-loxP-PURO-loxP)
Clone info. A donor vector for introducing CMV-OsTIR1 at the human AAVS1 locus. Oryza sativa OsTIR1 (NP_001052659.1), codon optimized cDNA for the expression in human cells.
Vector backbone plasmid
Selectable markers Am^r (E. coli), Puro^r (mammalian cells)
Gene/insert name human AAVS1 genomic Oryza sativa OsTIR1 cDNA
Depositor|Developer Kanemaki, Masato |
Other clones in our bank

External Database
human AAVS1 Oryza sativa OsTIR1

        Reference sequence
          
         

        Distribution information

        Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
        Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature designated by the DEPOSITOR is requested (Yesbolatova, A. et al., Methods pii: S1046-2023 (18), 30331-1, 2019). This DNA clone is used for academic research purpose only. This is not to be used on a commercial basis. For use of this DNA clone except for internal academic research, the RECIPIENT must contact a NIG license representative at chizai@nig.ac.jp.
        Ordering
        Order form [Credit Card Payment]  [Bank Transfer Payment]
        MTA, for use for not-for-profit academic purpose [Word]
        MTA, for use for for-profit purpose [Word]
        Please visit Information of Request for Distribution.[link] 
        提供案内 (日本国内) [open/close]

        提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する(Yesbolatova, A. et al., Methods pii: S1046-2023 (18), 30331-1, 2019)。 学術研究にのみ限定、商業営利目的利用を禁ずる。学術内部利用以外の利用の際は、国立遺伝学研究所 (chizai@nig.ac.jp) に相談すること。
        提供依頼
        提供依頼書 [Word]
        提供同意書 (MTA, 非営利学術目的用)[Word]
        提供同意書 (MTA, 営利目的用)[Word]
        手続きの概要は、「提供申込みについて[link]」をご覧ください。

        Catalog # Resource name Shipping form Fee (non-profit org.)
        RDB16811 pMK364 (CMV-OsTIR1-loxP-PURO-loxP) DNA solution

        Please review the QC test results indicated by check icon below as well as clone information before placing your order.

        How to cite this biological resource

        Materials & Methods section:

        The pMK364 (CMV-OsTIR1-loxP-PURO-loxP) was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB16811).

        Reference section:

        Yesbolatova, A., Natsume, T., Hayashi, K.I., Kanemaki, M.T., Generation of conditional auxin-inducible degron (AID) cells and tight control of degron-fused proteins using the degradation inhibitor auxinole. Methods pii: S1046-2023 (18) 30331-1 (2019). PMID 31026591. [link to RRC of NBRP]

        Further references such as user reports and related articles (go to bottom)


        Tips

        Featured content

        Featured content Auxin Inducible Degron (AID) System (English text)
        Featured content Auxin Inducible Degron (AID) System (Japanese text)

        QC test results

        RIKEN BRC has sequenced portions of this material for quality test.
        Please review the QC test results indicated by check icon as well as clone information before placing your order.

        Test sheet RDB16811_A8Lpp1-4.pdf check

        Nucleotide sequence of a portion of this resource (if available).

        Primer: CMV_Forward (Pr0016)
        Region: CMV pro,OsTIR1 5'
        Sequence file: RDB16811_A8Lpf.seq check
        >D06157A7_A8LP_1_CMV-Forward_D03_12_ABI24.ab1
            1 NNNNNNNNNN NNNNNNTGNN GCNNTGGGCG GTANGCGTGT ACGGTGGGNN GTCTATATAA
           61 GCAGAGCTGG TTTAGTGAAC CGTCAGATCC GCTAGCGCTG CCACCATGAC ATACTTTCCT
          121 GAAGAGGTCG TCGAACACAT TTTTAGCTTC CTGCCTGCAC AGAGAGATAG AAACACAGTG
          181 AGCCTGGTCT GCAAAGTGTG GTACGAGATC GAACGCCTGA GCCGGAGAGG AGTGTTCGTC
          241 GGCAACTGCT ATGCTGTGAG AGCAGGCAGG GTCGCCGCTA GGTTTCCAAA TGTGCGCGCA
          301 CTGACCGTCA AGGGGAAACC CCACTTCGCC GACTTTAACC TGGTGCCCCC TGATTGGGGA
          361 GGATACGCCG GCCCTTGGAT CGAGGCAGCC GCTCGCGGCT GTCATGGACT GGAGGAACTG
          421 CGCATGAAGC GAATGGTGGT CTCTGACGAA AGTCTGGAGC TGCTGGCTCG GAGCTTCCCT
          481 AGGTTTCGCG CACTGGTGCT GATTTCTTGC GAAGGCTTCA GCACCGATGG ACTGGCAGCC
          541 GTGGCCTCCC ACTGTAAGCT GCTGCGGGAG CTGGACCTCC AGGAGAATGA AGTGGAGGAT
          601 AGAGGCCCCA GATGGCTGTC TTGCTTCCCA GACTCATGTA CCAGCCTGGT GTCCCTGAAC
          661 TTTGCCTGCA TCAAAGGCGA AGTGAATGCT GGGTCCCTGG AGCGGCTGGT CTCAAGAAGC
          721 CCCAACCTGA NGTCTCTGCG GCTGANNCGG ANCGTGAGCG TGGACACTCT GGCTAAGATT
          781 CTGCTGANAA CNCCTAACCT GGNNGNNCTG GGAANCGGCA ATCTGACAGA CGANTTCCAG
          841 ANAGANTCCT ACTTTAAANT GANNTCTGNC CNNNNNAANT GTAAAATGNT NNNNNNNCTG
        901 NNNNNNNTCT GGNNNNNNTC ACCNNNNNNN CNNNANCNTN NNNNNNCNNN NNNNNNN
        //
        Primer: PGK_N_rev (Pr0243)
        Region: loxP,SV40 pA,OsTIR1 3'
        Sequence file: RDB16811_A8Lpg.seq check
        >D06157A7_A8LP_1_PGK_N_rev_E03_15_ABI24.ab1
            1 NNNNNNNNNN NNNNNNNGGN ANANTTCGAG GTCGANNNCC TAAGCTTGGC TGGACGTAAA
           61 CTCCTCTTCN GACCTAATAA CTTCGTATAG CATACATTAT ACGAAGTTAT ATTAAGGGTT
          121 ATTGAATATG ATCGCTTAAG ATACATTGAT GAGTTTGGAC AAACCACAAC TAGAATGCAG
          181 TGAAAAAAAT GCTTTATTTG TGAAATTTGT GATGCTATTG CTTTATTTGT AACCATTATA
          241 AGCTGCAATA AACAAGTTAA CAACAACAAT TGCATTCATT TTATGTTTCA GGTTCAGGGG
          301 GAGGTGTGGG AGGTTTTTTA AAGCAAGTAA AACCTCTACA AATGTGGTAT GGCTGATTAT
          361 GATCTAGAGT CGCGGCCCCG GTGGATCCCG GGCCCGCGGT ACCGTCGACG GGCCCGGGAT
          421 CCGATGGATC CTCACAGAAT CTTCACAAAG TTGGGAGCAT CATCTCTTGC CCCTGCGGTG
          481 GTCCGATACA CATACAGTTT CTCCACCTTT GGCAGGTCGC CATGATTTTC CTCCATTTCG
          541 TTAGACCCGT CCCGCTCATT AATGACTTCC ACGTTCAGCA TAGGCATTTT ACTAGCCAGG
          601 ACCTGACAGC CCTTCAGAGT CACATTGCAA CTAGACATCC ACAGGCTCCT CATTGTCTCG
          661 TATCTGGCAA AGTTTCCCAG CAGAGCGGCA TCCCCGAAAG GGCTGTCCCG GATTTCCAGT
          721 TTTCGCAGAT TCTTACACCC GTTCATCACG TGCATCATGC CCTTATCGGA NTCTCCNGCA
          781 AATGCAATGC TCANCATCTC CAGCTGCTTA NCATACTTGC CNANGTACAT GAACACNNNG
          841 TCTGTCANCA NGNCNGAAAN GCTCAGCCTC NGNANNCCCT NNCANTCTNN CACGATANNN
        901 CCNAANCCTN CNTNCNNNGN NTGGNNNNNN ANNNCNNNNG NNTNNNNNNN NNN
        //
        Primer: PGKpro_F (Pr0249)
        Region: PuroR,mPGK ter
        Sequence file: RDB16811_A8Lph.seq check
        >D06157A7_A8LP_1_PGKpro_F_F03_18_ABI24.ab1
            1 NNNNNNNNNN NNNNNNNNTT NNNNNCTCCN GGCCTTTCGA CCTGCATCCN TCTAGATCTC
           61 GAGCAGCTGA AGCTTACCAT GACCGAGTAC AAGCCCACGG TGCGCCTCGC CACCCGCGAC
          121 GACGTCCCCA GGGCCGTACG CACCCTCGCC GCCGCGTTCG CCGACTACCC CGCCACGCGC
          181 CACACCGTCG ATCCGGACCG CCACATCGAG CGGGTCACCG AGCTGCAAGA ACTCTTCCTC
          241 ACGCGCGTCG GGCTCGACAT CGGCAAGGTG TGGGTCGCGG ACGACGGCGC CGCGGTGGCG
          301 GTCTGGACCA CGCCGGAGAG CGTCGAAGCG GGGGCGGTGT TCGCCGAGAT CGGCCCGCGC
          361 ATGGCCGAGT TGAGCGGTTC CCGGCTGGCC GCGCAGCAAC AGATGGAAGG CCTCCTGGCG
          421 CCGCACCGGC CCAAGGAGCC CGCGTGGTTC CTGGCCACCG TCGGCGTCTC GCCCGACCAC
          481 CAGGGCAAGG GTCTGGGCAG CGCCGTCGTG CTCCCCGGAG TGGAGGCGGC CGAGCGCGCC
          541 GGGGTGCCCG CCTTCCTGGA GACCTCCGCG CCCCACAACC TCCCCTTCTA CGAGCGGCTC
          601 GGCTTCACCG TCACCGCCGA CGTCGAGGTG CCCGAAGGAC CGCGCACCTG GTGCATGACC
          661 CGCAAGCCCG GTGCCTGACG CCCGCCCCAC GACCCGCAGC GCCCGACCGA AAGGAGCGCA
          721 CGACCCCATG CATCGATGAT ATCAGATCCC CGGGATGCAG AAATTGATGA TCTATTAAAC
          781 AATAAAGATG TCCACTNAAA TGGAAGTTTT TCCTGTCATA CTTTGTTAAG AANGGTGANA
          841 ACAGANTANC TACATTTTGA ATGGANNGAN TGGNNCTANN GGGGNGGGGG NGGGGGNGGG
          901 NNTAGATAAA TGNCNGNTNT TTACNNNANG NTNNTTACTA NNGNTTTNNG ANNNNNNTNN
        961 NNNNNNNN
        //
        Primer: PuroR_F (Pr0554)
        Region: PuroR,mPGK ter,loxP,AAVS1 arm 2
        Sequence file: RDB16811_A8Lpi.seq check
        >D06157A7_A8LP_1_PuroR_F_H03_24_ABI24.ab1
            1 NNNNNNNNNN NNNNNCNNNG NGCCCGANGN NCGCGCACCT GGTGCATGAC CCGCAAGCCC
           61 GGTGCCTGAC GCCCGCCCCA CGACCCGCAG CGCCCGACCG AAAGGAGCGC ACGACCCCAT
          121 GCATCGATGA TATCAGATCC CCGGGATGCA GAAATTGATG ATCTATTAAA CAATAAAGAT
          181 GTCCACTAAA ATGGAAGTTT TTCCTGTCAT ACTTTGTTAA GAAGGGTGAG AACAGAGTAC
          241 CTACATTTTG AATGGAAGGA TTGGAGCTAC GGGGGTGGGG GTGGGGTGGG ATTAGATAAA
          301 TGCCTGCTCT TTACTGAAGG CTCTTTACTA TTGCTTTATG ATAATGTTTC ATAGTTGGAT
          361 ATCATAATTT AAACAAGCAA AACCAAATTA AGGGCCAGCT CATTCCTCCC ACTCATGATC
          421 TATAGATCTA TAGATCTCTC GTGGGATCAT TGTTTTTCTC TTGATTCCCA CTTTGTGGTT
          481 CTAAGTACTG TGGTTTCCAA ATGTGTCAGT TTCATAGCCT GAAGAACGAG ATCAGCAGCC
          541 TCTGTTCCAC ATACACTTCA TTCTCAGTAT TGTTTTGCCA AGTTCTAATT CCATCAGAAG
          601 CTGGTCGAGA TCCGGAACCC TTAATATAAC TTCGTATAAT GTATGCTATA CGAAGTTATT
          661 AGGTCCCTCG AAGAGGTTCA CTAAGCTTTA CTAGGGACAG GANTGGTGAC AGAAAAGCCC
          721 CATCCTTANG CCTCCTCCTT CCTAGTCTCC TGATATTGGG TCTAACCCCC ACCTCCTGTT
          781 ANGCAGANTC CTTATCTGGT GACACACCCC CATTTCCTGG ANCCNTCTCT CTCCTTGCCN
          841 GAACCTCTAA NGTTTGCTTA CNATGGANCC NGANNNGATC CNGGGANGGA NANCTTNNNN
          901 GGGGGNNNNN GGNANNGGGG GGNNGCGTGN NCTGNCCNGN TNCTCANNGN NNNNCNNNNN
        961 NNNCCNNNNN CNNNNNNCNN NNNNNNNN
        //
        Primer: pUC-CAPbs_up_F (Pr0536)
        Region: T3 pro,AAVS1 arm 1
        Sequence file: RDB16811_A8Lpj.seq check
        >16811_16811_B3C2F_pUC-CAPbs_up_F_D01_04_ABI08.ab1
            1 NNNNNNNNNN NNNNNNNNNN NCNNNNNCAA TTAANGTGAG TTAGCTCACT CATTAGGCAC
           61 CCCAGGCTTT ACACTTTATG CTTCCGGCTC GTATGTTGTG TGGAATTGTG AGCGGATAAC
          121 AATTTCACAC AGGAAACAGC TATGACCATG ATTACGCCAA GCTCAGAATT AACCCTCACT
          181 AAAGGGACTA GTCCTGCAGG TTTAAACGAA TTCGCCCTTT GCTTTCTCTG ACCAGCATTC
          241 TCTCCCCTGG GCCTGTGCCG CTTTCTGTCT GCAGCTTGTG GCCTGGGTCA CCTCTACGGC
          301 TGGCCCAGAT CCTTCCCTGC CGCCTCCTTC AGGTTCCGTC TTCCTCCACT CCCTCTTCCC
          361 CTTGCTCTCT GCTGTGTTGC TGCCCAAGGA TGCTCTTTCC GGAGCACTTC CTTCTCGGCG
          421 CTGCACCACG TGATGTCCTC TGAGCGGATC CTCCCCGTGT CTGGGTCCTC TCCGGGCATC
          481 TCTCCTCCCT CACCCAACCC CATGCCGTCT TCACTCGCTG GGTTCCCTTT TCCTTCTCCT
          541 TCTGGGGCCT GTGCCATCTC TCGTTTCTTA GGATGGCCTT CTCCGACGGA TGTCTCCCTT
          601 GCGTCCCGCC TCCCCTTCTT GTANGCCTGC ATCATCACCG TTTTTCTGGA CAACCCCAAA
          661 GTACCCCGTC TCCCTGGCTT TAGCCACCTC TCCATCCTCT TGCTTTCTTT GCCTGGACAC
          721 CCCGTTCTCC TGTGGATTCG GGTCACCTCT CACTCCTTTC ATTTGGGCAG CTCCCCTACC
          781 CCCCTTACCT CTCTAGTCTG TGCTAGCTCT TCCAGCCCCC NGTCATGGCA TCTTCCAGGG
          841 GTNCNANANC TCANCTAGTC TTCTNNCTCC NNNCNNGGGC CCCTATGNNN ACTTNNNNAN
          901 AGCANGNTNG CTGCCNCCAG GGNTCCNNNN NNCNCNANNN GGNNNNNNNN TNANNNNCNN
        961 NNGNNNNNNN NNN
        //

        Please visit Sequencing and PCR primers for primer information.


        References

        Original, user report and related articles

        original Yesbolatova, A., Generation of conditional auxin-inducible degron (AID) cells and tight control of degron-fused proteins using the degradation inhibitor auxinole. Methods pii: S1046-2023 (18) 30331-1 (2019). PMID 31026591. [link to RRC of NBRP]

        2024.03.26

        HTML_filter_RDB_240326.pl