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pET28/EqtII(8-69)-EGFP-His6

Marker of sphingomyelin in cell membrane. Bacterial expression plasmid of nontoxic Eqinatoxin II.

Catalog number RDB13497
Resource name pET28/EqtII(8-69)-EGFP-His6
Clone info. Marker of sphingomyelin in cell membrane. Bacterial expression plasmid of nontoxic Eqinatoxin II. To use the recombinant protein, oxidization after the purification is required to prevent its cytolytic activity. Refer Abe, M., Methods Cell Biol. 137: 15-24 (2017).
Comment V8C K69C mutations. Optimized for expression in E. coli.
Please refer to the following note by the depositor:
- the expression of this protein was lesser than other protein expression vectors,
- induction was performed at 30 centigrade OVERNIGHT,
- the volume of cultivation was 500 to 1000 mL to obtain enough amount.
Please refer the Methods Cell Biol. 137 :15-24, 2017 (PMID: 28065303) for the method of expression and purification of the protein.
Vector backbone pET-28b (Plasmid)
Size of vector backbone 5.4 kb
Selectable markers Kan^r
Gene/insert name Actinia equina Equinatoxin II cDNA Aequorea victoria GFP cDNA
Depositor|Developer Kobayashi, Toshihide | Abe, Mitsuhiro |
Other clones in our bank

External Database
Actinia equina Equinatoxin II
    Aequorea victoria GFP

            Reference sequence
              
             

            Distribution information

            Please check terms and conditions set forth by the depositor, which are specified in the RIKEN BRC Catalog and/or Web Catalog.
            Terms and conditions for distribution In publishing the research results obtained by use of the BIOLOGICAL RESOURCE, a citation of literature designated by the DEPOSITOR is requested. (Makino, A., FASEB J. 29 (2): 477-493, 2015)
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            提供条件 利用者は、研究成果の公表にあたって寄託者の指定する文献を引用する(Makino, A., FASEB J. 29 (2): 477-493, 2015)。
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            RDB13497 pET28/EqtII(8-69)-EGFP-His6 DNA solution

            Please review the QC test results indicated by check icon below as well as clone information before placing your order.

            How to cite this biological resource

            Materials & Methods section:

            The pET28/EqtII(8-69)-EGFP-His6 was provided by the RIKEN BRC through the National BioResource Project of the MEXT, Japan (cat. RDB13497).

            Reference section:

            Makino, A., Abe, M., Murate, M., Inaba, T., Yilmaz, N., Hullin-Matsuda, F., Kishimoto, T., Schieber, N.L., Taguchi, T., Arai, H., Anderluh, G., Parton, R.G., Kobayashi, T., Visualization of the heterogeneous membrane distribution of sphingomyelin associated with cytokinesis, cell polarity, and sphingolipidosis. FASEB J. 29 (2): 477-493 (2015). PMID 25389132.

            Further references such as user reports and related articles (go to bottom)


            References and tips

            Featured content

            Featured content Visualization of Organelles (English text)
            Featured content Sphingolipid signaling pathway (English text)

            QC test results

            RIKEN BRC has sequenced portions of this material for quality test.
            Please review the QC test results indicated by check icon as well as clone information before placing your order.

            Test sheet RDB13497_B1L6p1-2.pdf check

            Nucleotide sequence of a portion of this resource (if available).

            Primer: pET_lacIpro_R (Pr0838)
            Region: lacO,RBS,insert 5'(EqtII(8-69) 5')
            Sequence file: RDB13497_B1L6d.seq check
            >13497_13497_B2KfS_pET_lacIpro_R_F01_06_ABI08.ab1
                1 NNNNNNNNNN NNNTNNCNNT AGGGGNNNTG TGAGCGGANA ACAATTCCCC TCTAGAAATA
               61 ATTTTGTTTA ACTTTAAGAA GGAGATATAC CGGTACCATG AGCGCGGATG TGGCTGGTGC
              121 ATGCATAGAT GGCGCCTCTC TGAGTTTCGA CATCCTCAAG ACCGTGTTGG AAGCTCTGGG
              181 GAATGTCAAA CGGAAGATTG CCGTAGGAGT GGACAACGAA AGCGGTAAGA CATGGACTGC
              241 CCTGAATACG TACTTCAGGT CTGGAACCAG CGACATTGTT CTGCCCCACA AAGTCCCACA
              301 TGGGTGTGCA CTCCTGTACA ATGGGCAGAA AGATCGAGGA CCTGTTGCGA CTGGTGCAGT
              361 TGGGGTATTG GCCTATCTCA TGTCAGATGG CAACACCCTT GCTGTGCTGT TTTCCGTCCC
              421 CTATGACTAC AACTGGTATT CCAACTGGTG GAATGTGCGC ATCTACAAGG GCAAACGTAG
              481 AGCCGATCAA CGCATGTATG AGGAGCTTTA CTACAACCTG TCCCCGTTTA GGGGCGACAA
              541 TGGATGGCAC ACACGGAATC TCGGGTATGG CCTGAAGAGC AGANGCTTCA TGAACAGCAG
              601 TGGCCATGCC ATCCTGGAGA TTCNCGTGTC CNANGCTGGT GGANGGNCNN GCGGCGGNNC
              661 NNNNNTCNNA NGANNANNNN NNNANNCNTN NNNAGNNNNN NANNNNCTGN NNNNNNGGGN
            721 NNNNNCNNNN NNNNNN
            //
            Primer: T7 terminator (Pr0155)
            Region: 6xHis,insert 3'(EGFP 3')
            Sequence file: RDB13497_B1L6e.seq check
            >13497_13497_B1L6_T7terminater_C02_08_ABI24.ab1
                1 NNNNNNNNNT NNNNNCTTTG TNNGCNGCCG GATCTCAGTG GTGGTGGTGG TGGTGAAGCT
               61 TCTTGTACAG CTCGTCCATG CCGAGAGTGA TCCCGGCGGC GGTCACGAAC TCCAGCAGGA
              121 CCATGTGATC GCGCTTCTCG TTGGGGTCTT TGCTCAGGGC GGACTGGGTG CTCAGGTAGT
              181 GGTTGTCGGG CAGCAGCACG GGGCCGTCGC CGATGGGGGT GTTCTGCTGG TAGTGGTCGG
              241 CGAGCTGCAC GCTGCCGTCC TCGATGTTGT GGCGGATCTT GAAGTTCACC TTGATGCCGT
              301 TCTTCTGCTT GTCGGCCATG ATATAGACGT TGTGGCTGTT GTAGTTGTAC TCCAGCTTGT
              361 GCCCCAGGAT GTTGCCGTCC TCCTTGAAGT CGATGCCCTT CAGCTCGATG CGGTTCACCA
              421 GGGTGTCGCC CTCGAACTTC ACCTCGGCGC GGGTCTTGTA GTTGCCGTCG TCCTTGAAGA
              481 AGATGGTGCG CTCCTGGACG TAGCCTTCGG GCATGGCGGA CTTGAAGAAG TCGTGCTGCT
              541 TCATGTGGTC GGGGTAGCGG CTGAAGCACT GCACGCCGTA NGTCAGGGTG GTCACGANGG
              601 TGGGCCAGGG CACGGGCAGC TTGCCGGTGG TGCAGATGAA CTTCNNGNTC ANCTTGNCNT
              661 ANGTGGNATC GCCCTCGCCN TCGNNNNANN CGCTGAANTN GNGGNNNNTN ACNTCNNNNN
            721 CNNNCTCNAN NNNGNNGGNN NNNNNCCNNN NNNNNNN
            //
            Primer: EGFP-N_R2 (Pr0905)
            Region: insert mid(EGFP 5',EqtII(8-69) 3')
            Sequence file: RDB13497_B1L6f.seq check
            >13497_13497_B2KfS_EGFP-N_R2_A01_01_ABI08.ab1
                1 NNNNNNNNNN NNNCNNNNNN CTGCACGCCG TAGGTCAGGG TGGTCACGAG GGTGGGCCAG
               61 GGCACGGGCA GCTTGCCGGT GGTGCAGATG AACTTCAGGG TCAGCTTGCC ATAGGTGGCA
              121 TCGCCCTCGC CCTCGCCGGA CACGCTGAAC TTGTGGCCGT TTACGTCGCC GTCCAGCTCG
              181 ACCAGGATGG GCACCACCCC GGTGAACAGC TCCTCGCCCT TGCTCACCAT GGATCCTCCT
              241 CCTCCTCCTC CGAATTCAGA TCCGCCGCCT GACCCTCCAC CAGCCTTGGA CACGTGAATC
              301 TCCAGGATGG CATGGCCACT GCTGTTCATG AAGCCTCTGC TCTTCAGGCC ATACCCGAGA
              361 TTCCGTGTGT GCCATCCATT GTCGCCCCTA AACGGGGACA GGTTGTAGTA AAGCTCCTCA
              421 TACATGCGTT GATCGGCTCT ACGTTTGCCC TTGTAGATGC GCACATTCCA CCAGTTGGAA
              481 TACCAGTTGT AGTCATAGGG GACGGAAAAC AGCACAGCAA GGGTGTTGCC ATCTGACATG
              541 AGATAGGCCA ATACCCCAAC TGCACCAGTC GCAACAGGTC CTCGATCTTT CTGCCCATTG
              601 TACAGGANTG CACACCCATG TGGGANTTTG TGGGGCANAA NAATGTCGCT GGNTCCNGAN
              661 CTGAANTACG TATTCNNGGC ANTCNNTGNC TTANCGCTTT CGTNGNCNNN NNCTANNGCA
            721 ANCNNNNNNT NNN
            //
            Primer: pGL3_RV4 (Pr0335)
            Region: lacI
            Sequence file: RDB13497_B1L6g.seq check
            >13497_13497_B2KfS_pGL3_RV4_F01_06_ABI08.ab1
                1 NNNNNNNNNN NNNNNNNNNN NNNNNTCTCN NGGGCATCGG TCGANGATCC CGGTGCCTAA
               61 TGAGTGANGC TAACTTACAT TAATTGCGTT GCGCTCACTG CCCGCTTTCC AGTCGGGAAA
              121 CCTGTCGTGC CAGCTGCATT AATGAATCGG CCAACGCGCG GGGAGAGGCG GTTTGCGTAT
              181 TGGGCGCCAG GGTGGTTTTT CTTTTCACCA GTGAGACGGG CAACAGCTGA TTGCCCTTCA
              241 CCGCCTGGCC CTGAGAGAGT TGCAGCAAGC GGTCCACGCT GGTTTGCCCC AGCAGGCGAA
              301 AATCCTGTTT GATGGTGGTT AACGGCGGGA TATAACATGA GCTGTCTTCG GTATCGTCGT
              361 ATCCCACTAC CGAGATATCC GCACCAACGC GCAGCCCGGA CTCGGTAATG GCGCGCATTG
              421 CGCCCAGCGC CATCTGATCG TTGGCAACCA GCATCGCAGT GGGAACGATG CCCTCATTCA
              481 GCATTTGCAT GGTTTGTTGA AAACCGGACA TGGCACTCCA GTCGCCTTCC CGTTCCGCTA
              541 TCGGCTGAAT TTGATTGCGA GTGAGATATT TATGCCAGCC NGCCNGACGC ANACGCGCCG
              601 ANACAGAACT TAATGNGCCC GCTAACAGCG CGANTTGCTG GTGANCCAAT GCGACCAGAT
              661 GCTCCNCGCC CNGTCNCGNA NCGTCNNCNT GGGNNAAAAN NNTANTGNTG ANGGGTGNCN
            721 GNNCNNNNNN NTNNANAANN NNNNNCNNNN NNNNNN
            //

            Please visit Sequencing and PCR primers for primer information.


            References

            Original, user report and related articles

            original Makino, A., Visualization of the heterogeneous membrane distribution of sphingomyelin associated with cytokinesis, cell polarity, and sphingolipidosis. FASEB J. 29 (2): 477-493 (2015). PMID 25389132.
            protocol Abe, M., Dynamics of sphingomyelin-and cholesterol-enriched lipid domains during cytokinesis. Methods Cell Biol. 137: 15-24 (2017). PMID 28065303.
            user_report Ueda, Y., Sphingomyelin localization in the intestinal crypt surface. Biochem Biophys Res Commun. 2022 Jun 30;611:14-18 (2022). PMID 35472605.

            2023.05.22

            GNP_filter3_RDBDEP_html_230512.pl