Please review the QC test results indicated by icon below as well as clone information before placing your order.

pMY

Complete genome of JC virus, archetype

Remarks, protocol and/or map (gif)	RDB03032.gif

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QC test results

RIKEN BRC has sequenced portions of this material for quality test.
Please review the QC test results indicated by icon as well as clone information before placing your order.

Test sheet	RDB17355_A9F3p1-2.pdf

Nucleotide sequence of a portion of this resource (if available).

Primer: pUC-CAPbs_up_F (Pr0536) Region: CAP binding site,lac pro,lacO,insert 5' Sequence file: RDB17355_A9F3g.seq
>03032_17355_A9F3_2_pUC-CAPbs_up_F_C04_07_ABI24.ab1     1 NNNNNNNNNN NNNNNNNCNC NNCGCNNNAA TGTGAGTTAG CTCACTCATT AGGCACCCCA    61 GGCTTTACAC TTTATGCTTC CGGCTCGTAT GTTGTGTGGA ATTGTGAGCG GATAACAATT   121 TCACACAGGA AACAGCTATG ACCATGATTA CGCCAAGCTT GCATGCCTGC AGGTCGACTC   181 TAGAGGATCC TGTGTTTTCA TCATCACTGG CAAACATTTC TTCATGGCAA AACAGGTCTT   241 CATCCCACTT CTCATTAAAT GTATTCCACC AGGATTCCCA TTCATCTGTT CCATAGGTTG   301 GCACCTAAAA ACAAAAAATT AAGTTTATTG TAAAAAACAA AATGCCCTGC AAAAGAAAAA   361 TTGTGGTTTA CCTTAAAGCT TTAGATCCCT GTAGGGGGTG TCTCCAAGAA CCTTCTCCCA   421 GCAATGAAGA GCTTCTTGGG TTAAGTCACA CCCAAACCAT TGTCTGAAGC AATCAAAGCA   481 ATAGCAATCT ATCCACACAA GTGGGCTGCT TCTTAAAAAT TTTCTGTTTC TATGCCTTAA   541 TTTTAGCATG CACATTAAAC AGGGGCAATG CACTGAAGGA TTAGTGGCAC AATTAGGCCA   601 TTCCTTGCAA TAAAGGGTAT CAGAATTAGG AGGAAAATCA CAACCAACCT CTGAACTATT   661 CCATGTACCA AAATCAGGCT GATGAGCAAC TTTTACACCT TGTTCCATTT TTTTATATAA   721 AAAATTCATT CTCTTCATTT TGTCTTCGTC CCCACCTTTA TCAGGNTGAA GTTCTTTGCA   781 TTTTTTCAGA TAAGCTTTTC TCATGACAGG AATGTTTCNN CATGCAGATC TATCAANGCC   841 TAATAAATCC NTGANCTCCA NGGATTCCTC CCNATTCAGC ACTTTNGTCC ATTTTTTGCT   901 TTTTGTAGCA AAAAATTANN GCAAAAANNN NAAAAANNAN NNNNNNTTCC NNGGCCNCCN 961 AAAAAAGCNN NNNNNCCCNN ANNANTTNNG ANTAANNTNN GNNNGNNNNN NNNNN //
Primer: pUC-M13_-100 (Pr0310) Region: insert 3' Sequence file: RDB17355_A9F3h.seq
>03032_17355_B1HpF_pUC-M13_-100_H02_23_ABI24.ab1     1 NNNNNNNNNN NANNNNGGNA NGCCNGGGNT TTCCCNGTCA CGACGTTGTA AAACGACGGC    61 CAGTGAATTC GAGCTCGGTA CCCGGGGATC CCAACACTCT ACCCCACCTA AGAAGAAAAA   121 AAAGGTAGAA GACCCTAAAG ACTTTCCTGT AGATCTGCAT GCATTCCTCA GTCAAGCTGT   181 GTTTAGTAAT AGAACTGTTG CTTCTTTTGC TGTGTATACC ACTAAAGAAA AAGCTCAAAT   241 TTTATATAAG AAACTTATGG AAAAATATTC TGTAACCTTT ATAAGTAGAC ATGGTTTTGG   301 GGGTCATAAT ATCTTGTTTT TTCTAACACC ACATAGACAT AGAGTTTCAG CAATTAATAA   361 TTACTGTCAA AAACTATGTA CCTTTAGTTT TTTAATTTGT AAAGGTGTGA ATAAGGAATA   421 CTTGTTTTAC AGTGCCTTGT GTAGACAGCC ATATGCAGTA GTGGAAGAAA GTATTCAGGG   481 GGGCCTTAAG GAGCATGACT TTAACCCAGA AGAACCAGAA GAAACTAAGC AGGTTTCATG   541 GAAATTAGTT ACACAGTATG CTTTGGACAC CAAGTGTGAG GATGTTTTCT TGCTTATGGG   601 CATGTACTTA GACTTTCAGG AAAACCCTTT GCNATGCAAA AAATGNGAAA AAAANGNNCA   661 GCCAAATCAC NTNNACCATC ATGAAAAGCA CTATTATNNN GNCNNANTTT TNNNNNANNN 721 NNAAANNNNA AAAANNNNNT NNNNNNNNNN //
Primer: JCsp_f1 (Pr0628) Region: insert mid Sequence file: RDB17355_A9F3i.seq
>03032_17355_A9F3_2_JCsp_f1_B01_04_ABI24.ab1     1 NNNNNNNNNN NNNNNNNGGN CCCNNCAAAA AGAANAGGAG AAAGGAAGGA NCCCGTGCAA    61 GTTCCAAAAC TTCTTATAAG AGGAGGAGTA GAAGTTCTAG AAGTTAAAAC TGGGGTTGAC   121 TCAATTACAG AGGTAGAATG CTTTTTAACT CCAGAAATGG GTGACCCAGA TGAGCATCTT   181 AGGGGTTTTA GTAAGTCAAT TTCTATATCA GATACATTTG AAAGTGACTC CCCAAATAAG   241 GACATGCTTC CTTGTTACAG TGTGGCCAGA ATTCCACTAC CCAATCTAAA TGAGGATCTA   301 ACCTGTGGAA ATATACTAAT GTGGGAGGCT GTGACCTTAA AAACTGAGGT TATAGGGGTG   361 ACAACTTTGA TGAATGTGCA CTCTAATGGT CAAGCAACTC ATGACAATGG TGCAGGAAAG   421 CCAGTGCAGG GCACCAGCTT TCATTTTTTT TCTGTTGGGG GGGAGGCTTT AGAATTACAG   481 GGGGTGGTTT TTAATTACAG AACAAAGTAC CCAGATGGAA CAATTTTTCC AAAGAATGCA   541 ACAGTGCAAT CTCAAGTAAT GAACACAGAG CACAAGGCGT ACCTAGATAA GAACAAAGCA   601 TATCCTGTTG AATGTTGGGT TCCTGATCCC ACCAGAAATG AAAACACAAG ATATTTTGGG   661 ACACTAACAG GAGGAGAAAA TGTTCCTCCA GTTCTTCATA TAACAAATAC TGCNACAACA   721 GTGCTGCTTG ATGAATTTGG TGTTGGGCCA CTTTGCNAAG GTGACAACTT GTATTTGTCA   781 GCTGTTGATG TTTGTGGAAT GTTTACTAAC AGATCTGGTT CCCNNCANTG GAGAGGANTG   841 TCCNGATATT TNNNNGTTCA GCTCANAAAA AGGANGGTTA AAAACCCCTA CCCNATTTCT   901 TNCCTTCTTA CTGATTTGAN TNNNANAANN NNCCCTNNAN TTGANGGGNA NCCTANNNAN 961 GGNANNNNNG CNNNNNNNNN N //
Primer: JCsp_R2 (Pr0635) Region: insert mid Sequence file: RDB17355_A9F3j.seq
>03032_17355_A9F3_2_JCsp_R2_B03_06_ABI24.ab1     1 NNNNNNNNNN NNNNNNNNNT NNNNCTTTAT TAAAATGTAC TGCATATTAC AATAAAGGCT    61 TTTGGTTACA GCATCTTTGT TTGCAACTGT CCATATCTGT CAACATATCT CATCATGTCT   121 GGGTCCCCTG GAAGTTCCTC TGTCCCCTCA AAAACTCTAA CCTCCTCTAC CTGAGCATCC   181 ATACCATACA TAGGCTGCCC ATCAACTCTA GGGGTCCTTC TGTTAATCAA ATCAGTAAGA   241 AGGAAAGAAA TTGGGTAGGG GTTTTTAACC CTCCTTTTTC TGAGCTGAAC CTTAAAATAT   301 CTGGACAGTC CTCTCCACTG CTGGGAACCA GATCTGTTAG TAAACATTCC ACAAACATCA   361 ACAGCTGACA AATACAAGTT GTCACCTTTG CAAAGTGGCC CAACACCAAA TTCATCAAGC   421 AGCACTGTTG TGGCAGTATT TGTTATATGA AGAACTGGAG GAACATTTTC TCCTCCTGTT   481 AGTGTCCCAA AATATCTTGT GTTTTCATTT CTGGTGGGAT CAGGAACCCA ACATTCAACA   541 GGATATGCTT TGTTCTTATC TAGGTACGCC TTGTGCTCTG TGTTCATTAC TTGAGATTGC   601 ACTGTTGCAT TCTTTGGAAA AATTGTTCCA TCTGGGTACT TTGTTCTGTA ATTAAAAACC   661 ACCCCCTGTA ATTCTAAAGC CTCCCCCCCA ACAGAAAAAA AATGAAAGCT GGTGCCCTGC   721 ACTGGCTTTC CTGCACCATT GTCATGAGTT GCTTGACCAT TAGAGTGCAC ATTCATCAAA   781 GTTGTCACCC CTATAACCTC AGTTTTTAAG GTCACAGCCT CCCACATTAG TATATTTCCA   841 CANGTTAGAT CCTCATTTAG ATTGGGTAGT NNAATTCTGG NCACACTGTA ACNAGGAANC   901 ATGTCCTTAT TTGGGGANTC ANTTTCAAAT GTATCTGATA TAGAAATTGA CTTACTAAAA 961 CCCCNNANAT GCTCATCNNG GNNACCCATT TNNNGNNNNT NNAAANNNNN NNNNN //
Primer: Jcsp_f4 (Pr0627) Region: insert mid Sequence file: RDB17355_A9F3k.seq
>03032_17355_A9F3_2_JCsp_f4_F01_16_ABI24.ab1     1 NNNNNNNNNN NNNNNNNCNN NTTNNGNACT TTGTCNNTTT TTGCTTTTTG TAGCAAAAAA    61 TTAGTGCAAA AAAGGGAAAA ACAAGGGAAT TTCCCTGGCC TCCTAAAAAG CCTCCACGCC   121 CTTACTACTT CTGAGTAAGC TTGGAGGCGG AGGCGGCCTC GGCCTCCTGT ATATATAAAA   181 AAAAGGGAAG GTAGGGAGGA GCTGGCTAAA ACTGGATGGC TGCCAGCCAA GCATGAGCTC   241 ATACCTAGGG AGCCAACCAG CAGACAGCCA GAGGGAGCCC TGGCTGCATG CCACTGGCAG   301 TTATAGTGAA ACCACTCCCA TAGTCCTTAA TCACAAGTAA ACAAAGCACA AGGGGAAGTG   361 GAAAGCAGCC AAGGGAACAT GTTTTGCGAG CCAGAGCTGT TTTGGCTTGT CACCAGCTGG   421 CCATGGTTCT TCGCCAGCTG TCACGTAAGG CTTCTGTGAA AGTTAGTAAA ACCTGGAGTG   481 GAACTAAAAA AAGAGCTCAA AGGATTTTAA TTTTTTTGTT AGAATTTTTG CTGGATTTTT   541 GCACAGGTGA AGACAGTGTA GACGGGAAAA AAAGGCAGAA ACACAGTGGT TTGACTCAGC   601 AGACATACAG TGCTTTGCCT GAACCAAAAG CTACATAGGT AAGTAATGTT TTTTTTTGTG   661 TTTTCAGGTT CATGGGTGCC GCACTTGCAC TTTTGGGGGA NCTAGTTGCT ACTGTTTCTG   721 ANGCTGCTGC TGCCACAGGA TTTTCAGTAG CTGAAATTGC TGCTGGAGAN GCTGCTGCTA   781 CTATAGAAGT TGAAATTGCA TCCCTTGCTA CTGTAGANGG GNNTACAAGT ACCTCTGANG   841 CTATANCTGC AATAGGCCTT ACTCCTGNNA CATATGCTGT AANTACNNGA GCNNCNGGGG   901 GCTGTANCNN GGNTTTNNTG NNNTNGGTTC AAACTNNNAN NNGGTGGNNG NGCTNTNGCT   961 CANTTGGGNN NTNNANTTTT TGCTGNNNNG GNATCATAAA GTTTNNNNNN TNNGGNNTTT 1021 TNANCANNNN NNNNNN //

Please visit Sequencing and PCR primers for primer information.

References

Original, user report and related articles

2023.05.01

GNP_filter3_RDBDEP_html_230501.pl